CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.10087.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.10087.1.A1_at CV259549 hypothetical protein - 1e-13 At2g36310 URH1 (URIDINE-RIBOHYDROLASE 1) S.X. H.G.
0.60 86.0 PtpAffx.156340.1.S1_at CX657667 hypothetical protein - 1e+0 At2g26520 unknown protein S.X. H.G.
0.60 86.0 PtpAffx.221308.1.S1_at pmrna38101 hypothetical protein - 1e-21 At1g72000 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative S.X. H.G.
0.50 78.6 Ptp.5821.1.S1_at CV240646 glutathione peroxidase - 6e-28 At2g43350 ATGPX3 (GLUTATHIONE PEROXIDASE 3) S.X. H.G.
0.40 67.0 PtpAffx.5844.1.S1_at CX174548 hypothetical protein - 9e-5 At1g68680 unknown protein S.X. H.G.
0.25 43.6 Ptp.3867.1.S1_s_at CV243174 hypothetical protein - 1e-97 At1g78300 GRF2 (GENERAL REGULATORY FACTOR 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.0 98.0 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.8 97.4 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.4 97.0 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.2 96.8 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-9 63 PtpAffx.28955.1.S1_at BU868770 hypothetical protein - 4e-13 At2g36310 URH1 (URIDINE-RIBOHYDROLASE 1) C.G. S.X.
0.02 5e-1 36 Ptp.6846.1.S1_s_at CF231293 hypothetical protein - 7e-9 At3g44590 60S acidic ribosomal protein P2 (RPP2D) C.G. S.X.
0.01 2e+0 34 PtpAffx.221582.1.S1_at pmrna38537 cc-nbs-lrr resistance protein - 1e+0 At1g53350 ATP binding C.G. S.X.
0.01 2e+0 34 PtpAffx.203053.1.S1_at pmrna6046 hypothetical protein - 6e-45 At4g37510 ribonuclease III family protein C.G. S.X.
0.01 2e+0 34 PtpAffx.203053.1.S1_s_at pmrna6046 hypothetical protein - 6e-45 At4g37510 ribonuclease III family protein C.G. S.X.
0.02 8e+0 32 PtpAffx.70440.1.A1_at CV265221 hypothetical protein - 6e+0 At4g08028 - C.G. S.X.
0.02 8e+0 32 PtpAffx.6236.1.A1_at CV254686 hypothetical protein - 2e-24 At3g55360 CER10 C.G. S.X.
0.02 8e+0 32 PtpAffx.224208.1.S1_at pmrna42537 hypothetical protein - 6e-7 At1g32780 alcohol dehydrogenase, putative C.G. S.X.
0.02 8e+0 32 PtpAffx.207483.1.S1_at pmrna14856 hypothetical protein - 7e-3 At5g64905 PROPEP3 (Elicitor peptide 3 precursor) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 1e-13 77 Arabidopsis thaliana At2g36310 818204 URH1 (URIDINE-RIBOHYDROLASE 1) F:hydrolase activity, inosine nucleosidase activity, adenosine nucleosidase activity, uridine nucleosidase activity;P:uridine catabolic process;C:cytosol;BOMFPA - - - C.G. S.X.
0.44 2e-40 167 Glycine max GmaAffx.91879.1.S1_at CF807604 - - 5e+0 At2g36310 URH1 (URIDINE-RIBOHYDROLASE 1) C.G. S.X.
0.07 4e-2 38 Hordeum vulgare Contig8464_at Contig8464 - - 3e+0 At5g07840 ankyrin repeat family protein C.G. S.X.
0.08 2e-1 38 Oryza sativa Os09g0567900 AK061415.1 - Inosine/uridine-preferring nucleoside hydrolasedomain containing protein 7e-1 At2g36310 URH1 (URIDINE-RIBOHYDROLASE 1) C.G. S.X.
0.06 4e-7 56 Triticum aestivum Ta.5099.1.S1_a_at CD933043 - - 8e-7 At2g36310 URH1 (URIDINE-RIBOHYDROLASE 1) C.G. S.X.
0.03 7e+0 30 Vitis vinifera 1619771_s_at CD798243 geranyl diphosphate synthase - 1e+0 At5g64350 FKBP12 (FK506-BINDING PROTEIN) C.G. S.X.
0.14 1e-5 50 Zea mays ZmAffx.163.1.A1_at AI668189 pyrimidine-specific ribonucleoside hydrolase rihB - 8e-1 At5g55240 caleosin-related family protein / embryo-specific protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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