Gene omics information

Query gene ID Ptp.987.1.S1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6791.1Ptp.987.1.S1_atBU895364--5e-29At3g54420ATEP3S.X.H.G.
0.6791.1PtpAffx.57544.1.A1_atCV266909--3e-1At3g07920translation initiation factorS.X.H.G.
0.5078.6Ptp.6077.1.S1_s_atBI122891hypothetical protein-1e+0At4g21920unknown proteinS.X.H.G.
0.3661.6Ptp.7181.1.S1_atDN488307hypothetical protein-2e-6At1g49570peroxidase, putativeS.X.H.G.
0.3661.6PtpAffx.225157.1.S1_atpmrna44294hypothetical protein-1e-13At1g14550anionic peroxidase, putativeS.X.H.G.
0.3559.7PtpAffx.200248.1.S1_atpmrna481hypothetical protein-3e-7At3g43740leucine-rich repeat family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
13.699.4GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
13.499.4GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
10.699.0GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplar
8.198.5GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
5.997.4GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
4.195.5GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
3.894.9GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplar
3.794.7GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
3.694.5GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
3.193.2GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.172e-1377PtpAffx.225260.1.S1_atpmrna44483hypothetical protein-4e-13At3g54420ATEP3C.G.S.X.
0.212e-1377Ptp.7001.1.S1_atCX655784hypothetical protein-3e-5At2g43590chitinase, putativeC.G.S.X.
0.125e-1169PtpAffx.59940.1.S1_s_atCX657241--1e-3At2g43580chitinase, putativeC.G.S.X.
0.155e-859Ptp.4069.1.A1_atCA931925hypothetical protein-4e-8At3g54420ATEP3C.G.S.X.
0.023e-344PtpAffx.4.3.A1_x_atCV277108--6e-2At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)C.G.S.X.
0.023e-344PtpAffx.4.1.A1_a_atU01660.1hypothetical protein-4e-2At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)C.G.S.X.
0.022e-138PtpAffx.115578.1.S1_atAJ773212hypothetical protein-1e-7At3g61610aldose 1-epimerase family proteinC.G.S.X.
0.017e-136PtpAffx.358.1.S1_atCV239249--2e-26At3g52370FLA15 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15 PRECURSOR)C.G.S.X.
0.027e-136Ptp.2753.1.S1_atCX173643hypothetical protein-2e+1At5g02200FHL (FAR-RED-ELONGATED HYPOCOTYL1-LIKE)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.175e-29129Arabidopsis thalianaAt3g54420824608ATEP3encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.---C.G.S.X.
0.281e-1481Glycine maxGmaAffx.89972.1.S1_s_atCF805697--6e-5At2g43590chitinase, putativeC.G.S.X.
0.041e-344Hordeum vulgareContig4324_s_atContig4324--8e+0At4g26060unknown proteinC.G.S.X.
0.057e-550Oryza sativaOs04g0494100AB096140.1-Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A)1e-1At2g43590chitinase, putativeC.G.S.X.
0.045e-136Triticum aestivumTa.2278.2.S1_atCK196331--5e-2At3g47540chitinase, putativeC.G.S.X.
0.442e-47188Vitis vinifera1613871_atCF207387hypothetical protein LOC100256098-8e-6At3g54420ATEP3C.G.S.X.
0.029e-134Zea maysZm.13574.1.A1_atAY107909.1--2e-12At3g17420GPK1C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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