CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.943.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 78.6 Ptp.943.1.A1_at CK089617 hypothetical protein - 1e+0 At1g26590 zinc finger (C2H2 type) family protein S.X. H.G.
0.67 91.1 Ptp.122.1.S1_at CK100070 - - 2e-39 At4g22200 AKT2/3 (ARABIDOPSIS POTASSIUM TRANSPORT 2/3) S.X. H.G.
0.67 91.1 PtpAffx.22589.1.A1_at CV276606 hypothetical protein - 2e+0 At3g01230 unknown protein S.X. H.G.
0.50 78.6 PtpAffx.79920.1.A1_at CK090376 hypothetical protein - 1e+0 At5g59845 gibberellin-regulated family protein S.X. H.G.
0.40 67.0 Ptp.484.1.S1_at CX169919 hypothetical protein - 6e-7 At5g50740 metal ion binding S.X. H.G.
0.30 52.0 Ptp.3133.1.S1_s_at DN490108 hypothetical protein - 1e-24 At4g34980 SLP2 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.6 99.2 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
9.9 98.9 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
9.7 98.9 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.8 98.7 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.7 98.6 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.8 98.4 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.1 98.1 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.3 97.7 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-1 36 PtpAffx.95541.1.S1_at CV275138 hypothetical protein - 3e-1 At4g16510 YbaK/prolyl-tRNA synthetase-related C.G. S.X.
0.03 4e-1 36 PtpAffx.38074.3.S1_s_at CX174666 hypothetical protein - 8e-2 At2g12945 unknown protein C.G. S.X.
0.01 4e-1 36 PtpAffx.209013.1.S1_at pmrna17853 hypothetical protein - 7e-27 At1g68990 DNA-directed RNA polymerase, mitochondrial (RPOMT) C.G. S.X.
0.01 4e-1 36 PtpAffx.207976.1.S1_at pmrna15834 hypothetical protein - 8e-39 At1g68990 DNA-directed RNA polymerase, mitochondrial (RPOMT) C.G. S.X.
0.01 4e-1 36 PtpAffx.201044.1.S1_at pmrna2048 hypothetical protein - 2e+0 At4g17920 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 4e-1 36 Ptp.3249.1.S1_at BU862624 hypothetical protein - 7e-9 At1g55340 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.218494.1.S1_at pmrna34137 - - 4e-12 At5g46420 16S rRNA processing protein RimM family C.G. S.X.
0.03 2e+0 34 PtpAffx.214616.1.S1_at pmrna28402 hypothetical protein - 7e-2 At4g16765 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.01 2e+0 34 PtpAffx.203338.1.S1_at pmrna6643 hypothetical protein - 3e-2 At3g47110 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 Arabidopsis thaliana At1g26590 839199 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPBFV - - - C.G. S.X.
0.03 6e+0 32 Glycine max GmaAffx.88692.1.S1_s_at BK000115.1 - - 7e-8 At3g44735 PSK1 C.G. S.X.
0.03 6e-1 34 Hordeum vulgare HVSMEk0006H23r2_at HVSMEk0006H23r2 - - 2e-1 At1g18760 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 4e-2 40 Oryza sativa Os11g0237600 BM419650 - Disease resistance protein family protein 4e-1 At2g31290 ubiquitin thiolesterase C.G. S.X.
0.04 5e+0 32 Triticum aestivum Ta.8720.2.S1_x_at CD873389 - - 6e-1 At1g57730 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1619618_at CD010416 - - 5e+0 At5g42630 ATS (ABERRANT TESTA SHAPE) C.G. S.X.
0.03 2e+0 32 Zea mays Zm.8040.1.A1_a_at BM073932 hypothetical protein LOC100274921 - 1e+0 At5g46620 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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