Gene omics information

Query gene ID	Ptp.858.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	93.6	Ptp.858.1.S1_at	CV256345	hypothetical protein	-	4e-138	At2g22240	MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.71	92.6	Ptp.858.1.S1_x_at	CV256345	hypothetical protein	-	4e-138	At2g22240	MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.36446.1.A1_s_at	CV280501	hypothetical protein	-	1e-84	At2g22240	MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.33063.1.A1_at	CF120307	hypothetical protein	-	2e-19	At1g44170	ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.50938.1.A1_s_at	CK317898	hypothetical protein	-	1e-14	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	Ptp.3635.1.S1_s_at	CV243719	hypothetical protein	-	1e-54	At3g17760	GAD5 (glutamate decarboxylase 5)	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.0	98.4	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
8.0	98.4	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.4	97.7	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.0	97.5	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.7	97.3	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.5	97.1	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.4	97.0	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.9	96.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.1	95.5	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.7	94.7	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	2853	Ptp.858.1.S1_x_at	CV256345	hypothetical protein	-	4e-138	At2g22240	MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.48	0	918	PtpAffx.36446.1.A1_s_at	CV280501	hypothetical protein	-	1e-84	At2g22240	MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.48	0	918	PtpAffx.36446.1.A1_at	CV280501	hypothetical protein	-	1e-84	At2g22240	MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.36	0	799	Ptp.5264.1.S1_s_at	BU890209	hypothetical protein	-	3e-85	At4g39800	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.42	1e-148	527	PtpAffx.249.474.S1_at	CN523975	hypothetical protein	-	7e-59	At4g39800	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.27	9e-97	355	PtpAffx.249.570.S1_a_at	CV256339	hypothetical protein	-	8e-18	At2g22240	MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.27	9e-97	355	PtpAffx.249.570.S1_at	CV256339	hypothetical protein	-	8e-18	At2g22240	MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	4e-59	230	PtpAffx.249.508.S1_at	AJ773334	hypothetical protein	-	2e-27	At5g10170	MIPS3 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-2	40	PtpAffx.80284.1.S1_at	DN493880	hypothetical protein	-	1e+0	At5g04420	kelch repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.66	4e-138	492	Arabidopsis thaliana	At2g22240	816757	MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2)	** Referred to as MIPS1 in Mitsuhashi et al 2008. Myo-inositol-1-phosphate synthase isoform 2. Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.57	0	682	Glycine max	Gma.15564.2.S1_x_at	CD395825	-	-	2e-113	At5g10170	MIPS3 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3)	C.G.	S.X.	Please select
0.54	7e-83	307	Hordeum vulgare	Contig3592_at	Contig3592	-	-	4e-83	At4g39800	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	C.G.	S.X.	Please select
0.50	8e-95	349	Oryza sativa	Os03g0192700	AB012107.1	-	Myo-inositol-1-phosphate synthase	9e-100	At4g39800	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.62	6e-119	428	Triticum aestivum	Ta.220.1.S1_at	AF120148.1	myo-inositol 1-phosphate synthase	-	0	At2g22240	MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2)	C.G.	S.X.	Please select
0.58	0	1069	Vitis vinifera	1613429_s_at	CB974870	hypothetical protein LOC100259515	-	0	At2g22240	MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2)	C.G.	S.X.	Please select
0.42	1e-90	333	Zea mays	Zm.2986.1.A1_at	AF056326.1	low phytic acid1	-	4e-105	At4g39800	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage