Gene omics information

Query gene ID	Ptp.824.1.S1_x_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	86.0	Ptp.824.1.S1_x_at	CF936396	hypothetical protein	-	2e+0	At4g20250	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.83	97.0	PtpAffx.692.1.S1_x_at	CX185889	hypothetical protein	-	1e-1	At5g23950	C2 domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	Ptp.3673.1.S1_s_at	CK096543	hypothetical protein	-	6e-1	At4g00355	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.115945.1.S1_s_at	CN521589	hypothetical protein	-	5e-2	At4g00355	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	Ptp.5801.2.S1_a_at	BU836809	hypothetical protein	-	2e+0	At1g24440	protein binding / zinc ion binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.212106.1.S1_at	pmrna23742	calcium dependent protein kinase 12	-	5e-33	At5g23580	CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.5	97.1	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.2	96.8	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.4	95.9	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.3	95.8	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.2	95.6	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.79	0	860	PtpAffx.692.20.S1_s_at	BU883660	hypothetical protein	-	1e+0	At4g20250	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.82	5e-171	601	PtpAffx.692.16.S1_at	CV272320	hypothetical protein	-	2e+0	At4g20250	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.68	2e-148	525	PtpAffx.692.1.S1_x_at	CX185889	hypothetical protein	-	1e-1	At5g23950	C2 domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.47	1e-66	254	PtpAffx.44418.1.A1_at	CV232741	-	-	3e+0	At1g03880	CRU2 (CRUCIFERIN 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.26	1e-35	151	PtpAffx.692.36.S1_at	CK097610	hypothetical protein	-	5e-1	At5g67490	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	2e-9	63	PtpAffx.213995.1.S1_at	pmrna27265	hypothetical protein	-	6e-1	At1g07010	calcineurin-like phosphoesterase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.204649.1.S1_at	pmrna9146	hypothetical protein	-	5e-1	At4g17230	SCL13 (Scarecrow-like 13)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.122348.1.S1_at	CN549311	hypothetical protein	-	2e+0	At2g45450	ZPR1 (LITTLE ZIPPER 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	Ptp.4311.1.S1_at	CV232341	-	-	4e+0	At5g57880	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+0	34	Arabidopsis thaliana	At4g20250	827772	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	2e-16	87	Glycine max	GmaAffx.92973.1.S1_s_at	CF808698	-	-	2e+0	At3g22950	ATARFC1 (ADP-ribosylation factor C1)	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	HVSMEl0018D08f2_at	HVSMEl0018D08f2	-	-	1e+0	At3g57340	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.03	8e-1	36	Oryza sativa	Os12g0594100	9640.m03935	-	-	6e-2	At5g11930	glutaredoxin family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Triticum aestivum	TaAffx.50683.1.S1_at	CA736961	-	-	3e+0	At5g06300	carboxy-lyase	C.G.	S.X.	Please select
0.13	2e-21	101	Vitis vinifera	1610057_at	CF403319	similar to poly(A)-binding protein C-terminal interacting protein 6	-	9e-2	At3g16140	PSAH-1 (photosystem I subunit H-1)	C.G.	S.X.	Please select
0.03	7e-1	34	Zea mays	Zm.18128.1.S1_at	CN845258	Grx_I1 - glutaredoxin subgroup III	-	4e+0	At5g53490	thylakoid lumenal 17.4 kDa protein, chloroplast	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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