CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.8093.2.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 82.2 Ptp.8093.2.A1_at CV260421 hypothetical protein - 3e+0 At5g39630 vesicle transport v-SNARE family protein S.X. H.G.
0.36 61.6 PtpAffx.207392.1.S1_at pmrna14668 hypothetical protein - 2e-1 At5g43200 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.25 43.6 PtpAffx.216337.1.S1_at pmrna31051 hypothetical protein - 5e-1 At1g05650 polygalacturonase, putative / pectinase, putative S.X. H.G.
0.16 26.9 Ptp.2650.1.S1_at DN495004 - - 2e-1 At1g56045 ribosomal protein L41 family protein S.X. H.G.
0.11 18.1 PtpAffx.218919.1.S1_at pmrna34676 hypothetical protein - 2e+0 At1g20790 F-box family protein S.X. H.G.
0.08 12.9 PtpAffx.91108.1.S1_at CA825894 hypothetical protein - 8e-11 At2g45690 SSE1 (SHRUNKEN SEED 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.8 99.8 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
13.5 99.4 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
7.1 98.1 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.3 96.9 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.5 94.3 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.37 1e-61 236 PtpAffx.211744.1.S1_at pmrna23013 hypothetical protein - 5e-1 At3g05710 SYP43 (SYNTAXIN OF PLANTS 43) C.G. S.X.
0.31 2e-57 222 PtpAffx.88624.1.A1_at CV259077 hypothetical protein - 7e-1 At5g66570 PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1) C.G. S.X.
0.15 2e-8 59 PtpAffx.202354.1.S1_at pmrna4727 hypothetical protein - 1e-10 At4g02195 SYP42 (SYNTAXIN OF PLANTS 42) C.G. S.X.
0.02 3e-1 36 PtpAffx.223257.1.S1_at pmrna41160 hypothetical protein - 8e-56 At1g09830 phosphoribosylamine--glycine ligase (PUR2) C.G. S.X.
0.02 3e-1 36 PtpAffx.163761.1.S1_at CB239846 hypothetical protein - 3e-36 At4g28070 AFG1-like ATPase family protein C.G. S.X.
0.03 3e-1 36 Ptp.8038.1.A1_s_at CV255397 hypothetical protein - 3e-26 At3g19240 - C.G. S.X.
0.04 1e+0 34 PtpAffx.5349.1.A1_at CV252629 - - 3e+0 At5g41660 unknown protein C.G. S.X.
0.02 1e+0 34 PtpAffx.208682.1.S1_at pmrna17220 hypothetical protein - 8e-1 At2g26720 plastocyanin-like domain-containing protein / mavicyanin, putative C.G. S.X.
0.02 1e+0 34 PtpAffx.148282.1.S1_s_at AJ779144 tubulin alpha-1 chain - 1e-135 At1g04820 TUA4 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+0 32 Arabidopsis thaliana At5g39630 833959 vesicle transport v-SNARE family protein F:SNARE binding, receptor activity;P:membrane fusion, intra-Golgi vesicle-mediated transport;C:membrane;OMFPBAV - - - C.G. S.X.
0.05 7e-2 38 Glycine max GmaAffx.29228.1.S1_at BU965501 - - 2e-1 At3g18470 unknown protein C.G. S.X.
0.04 6e+0 30 Hordeum vulgare Contig25213_at Contig25213 - - 2e+0 At5g39920 - C.G. S.X.
0.04 6e+0 32 Oryza sativa Os12g0522740 9640.m03268 - - 2e-1 At5g23680 sterile alpha motif (SAM) domain-containing protein C.G. S.X.
0.04 3e+0 32 Triticum aestivum TaAffx.9544.1.S1_at CA595442 - - 3e+0 At1g42680 myosin-related C.G. S.X.
0.04 2e-1 34 Vitis vinifera 1609473_at CB346246 - - 4e+0 At4g01670 unknown protein C.G. S.X.
0.04 2e-2 38 Zea mays Zm.6396.1.A1_at BI396088 protein phosphatase 2C ABI2 - 5e+0 At3g11580 DNA-binding protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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