CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.8056.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 Ptp.8056.1.S1_at DN498527 hypothetical protein - 1e-7 At5g64300 ATGCH S.X. H.G.
0.77 94.9 PtpAffx.149678.1.A1_at AJ771832 hypothetical protein - 3e-50 At5g64300 ATGCH S.X. H.G.
0.67 91.1 Ptp.8056.1.S1_s_at DN498527 hypothetical protein - 1e-7 At5g64300 ATGCH S.X. H.G.
0.57 84.2 PtpAffx.212573.1.S1_at pmrna24632 hypothetical protein - 2e-40 At5g53050 hydrolase, alpha/beta fold family protein S.X. H.G.
0.55 82.2 PtpAffx.50176.2.S1_a_at CV256175 hypothetical protein - 1e-16 At2g26830 emb1187 (embryo defective 1187) S.X. H.G.
0.23 40.5 PtpAffx.71504.1.S1_at CK091854 hypothetical protein - 4e-1 At5g25940 early nodulin-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.7 99.9 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
8.3 98.5 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.0 96.6 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.2 95.6 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.4 90.4 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.6 84.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.6 84.5 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1509 Ptp.8056.1.S1_s_at DN498527 hypothetical protein - 1e-7 At5g64300 ATGCH C.G. S.X.
0.76 0 771 PtpAffx.62869.1.S1_at CA826139 hypothetical protein - 4e+0 At4g27690 VPS26B (VACUOLAR PROTEIN SORTING 26B) C.G. S.X.
0.11 7e-19 95 PtpAffx.249.220.S1_at CK091268 hypothetical protein - 5e-42 At5g64300 ATGCH C.G. S.X.
0.07 6e-4 46 Ptp.7411.1.S1_at DN495666 hypothetical protein - 7e-8 At5g64300 ATGCH C.G. S.X.
0.07 6e-4 46 Ptp.7411.1.S1_s_at DN495666 - - 7e-8 At5g64300 ATGCH C.G. S.X.
0.03 9e-3 42 PtpAffx.200804.1.S1_at pmrna1574 hypothetical protein - 4e-33 At5g59750 riboflavin biosynthesis protein, putative C.G. S.X.
0.02 5e-1 36 PtpAffx.62759.1.A1_at CV267227 hypothetical protein - 5e+0 At4g16566 histidine triad family protein / HIT family protein C.G. S.X.
0.02 5e-1 36 PtpAffx.13765.1.S1_at CK092620 hypothetical protein - 6e-1 At5g13090 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.44091.1.A1_at CK090612 hypothetical protein - 1e-1 At1g14720 XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 1e-7 57 Arabidopsis thaliana At5g64300 836551 ATGCH encodes GTP cyclohydrolase II that can functionally complement E. coli mutant deficient in this gene. It also has 3,4-dihydroxy-2-butanone-4-phosphate synthase activity which makes it a bifunctional enzyme involved in the formation of the pyrimidine and of the carbohydrate from GTP and ribulose-5-phosphate, respectively - - - C.G. S.X.
0.25 2e-28 127 Glycine max Gma.4647.1.S1_at CD409414 - - 4e-32 At5g64300 ATGCH C.G. S.X.
0.12 1e-17 89 Hordeum vulgare Contig5012_s_at Contig5012 - - 4e-22 At5g64300 ATGCH C.G. S.X.
0.14 7e-26 119 Oryza sativa Os02g0572400 AK069475.1 - 3,4-dihydroxy-2-butanone 4- phosphate synthase(DHBP synthase)] 5e-15 At5g64300 ATGCH C.G. S.X.
0.10 2e-6 54 Triticum aestivum Ta.21464.1.S1_at CD373690 - - 7e-23 At5g64300 ATGCH C.G. S.X.
0.22 9e-52 202 Vitis vinifera 1609397_at CF512090 hypothetical protein LOC100248717 - 1e-35 At5g64300 ATGCH C.G. S.X.
0.17 1e-30 133 Zea mays Zm.12216.1.S1_at CF050683 - - 8e-10 At5g64300 ATGCH C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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