CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.7970.1.S1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.82 96.3 Ptp.7970.1.S1_at DN502791 - - 4e+0 At2g35070 unknown protein S.X. H.G.
0.95 99.7 Ptp.7132.2.S1_at DN494473 - - 4e-1 At5g06710 HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA) S.X. H.G.
0.95 99.7 PtpAffx.140514.1.A1_at CV255394 - - 2e-1 At1g13080 CYP71B2 (CYTOCHROME P450 71B2) S.X. H.G.
0.90 97.9 PtpAffx.216920.1.S1_at pmrna31994 - - 4e-11 At5g15700 DNA-directed RNA polymerase (RPOT2) S.X. H.G.
0.90 97.9 PtpAffx.224460.1.S1_x_at pmrna43015 hypothetical protein - 6e-1 At2g38780 unknown protein S.X. H.G.
0.90 97.9 PtpAffx.225048.1.S1_at pmrna44125 hypothetical protein - 2e-1 At1g48980 oxidoreductase S.X. H.G.
0.90 97.9 PtpAffx.220631.1.S1_at pmrna37041 hypothetical protein - 7e-1 At3g46940 deoxyuridine 5'-triphosphate nucleotidohydrolase family S.X. H.G.
0.86 97.4 PtpAffx.13927.1.S1_at CX660204 hypothetical protein - 2e-6 At5g19300 - S.X. H.G.
0.82 96.3 PtpAffx.7770.1.A1_at CA934754 - - 4e+0 At1g58460 unknown protein S.X. H.G.
0.76 94.3 PtpAffx.80487.1.A1_at DN484662 - - 5e+0 At5g44265 lipid binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
67.0 100.0 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
11.7 99.2 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.2 97.6 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.3 81.0 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.6 66.6 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.6 66.6 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.5 63.3 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.5 63.3 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.5 63.3 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.4 59.5 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 7e-24 111 PtpAffx.72549.1.S1_at DN492219 - - 5e+0 At3g18320 F-box family protein C.G. S.X.
0.09 1e-13 77 PtpAffx.121370.1.A1_at CV242512 - - 1e+0 At5g42635 glycine-rich protein C.G. S.X.
0.06 9e-5 48 PtpAffx.61261.1.A1_at DN487020 - - 6e-1 At1g51430 unknown protein C.G. S.X.
0.04 1e-3 44 PtpAffx.811.2.S1_at DN490714 - - 5e+0 At3g10572 3-phosphoinositide-dependent protein kinase-1, putative C.G. S.X.
0.03 1e-3 44 PtpAffx.811.7.S1_at CV273653 - - 6e+0 Atcg00630 - C.G. S.X.
0.06 1e-3 44 PtpAffx.41810.1.S1_at DN486928 - - 8e+0 At1g50290 unknown protein C.G. S.X.
0.05 5e-3 42 PtpAffx.106209.1.A1_at DN493000 - - 3e-1 At4g28775 unknown protein C.G. S.X.
0.04 3e-1 36 PtpAffx.811.4.A1_at DN490126 hypothetical protein - 4e-3 At3g01680 unknown protein C.G. S.X.
0.03 3e-1 36 PtpAffx.24048.1.A1_at CV276951 hypothetical protein - 4e-1 At1g74880 NDH-O (NAD(P)H:plastoquinone dehydrogenase complex subunit O) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e+0 32 Arabidopsis thaliana At2g35070 818072 unknown protein F:molecular_function unknown;P:pollen tube development, pollen development;C:mitochondrion;P - - - C.G. S.X.
0.05 5e+0 32 Glycine max GmaAffx.73995.1.S1_at BQ080071 - - 2e-1 At1g21925 - C.G. S.X.
0.04 5e-1 34 Hordeum vulgare Contig7267_at Contig7267 - - 1e-3 At5g07460 PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2) C.G. S.X.
0.04 7e+0 32 Oryza sativa OsAffx.15088.1.S1_at - - - 0 C.G. S.X.
0.03 2e+1 30 Triticum aestivum TaAffx.80413.1.S1_at CA697117 - - 4e+0 At5g67230 glycosyl transferase family 43 protein C.G. S.X.
0.04 1e+0 32 Vitis vinifera 1613696_at CA817501 hypothetical protein LOC100242891 - 1e+0 At2g25720 unknown protein C.G. S.X.
0.06 6e+0 30 Zea mays Zm.2882.1.A1_at BM381838 hypothetical protein LOC100191740 - 3e-10 At5g06090 GPAT7 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 7) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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