Gene omics information

Query gene ID	Ptp.7900.1.S1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	88.1	Ptp.7900.1.S1_at	DN500858	-	-	3e+0	At5g62140	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.86	97.4	PtpAffx.13767.1.S1_at	BU870339	-	-	3e-1	At3g22275	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.77	94.9	Ptp.2376.1.S1_at	CK092341	hypothetical protein	-	4e-1	At5g08440	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.71	92.6	Ptp.2302.1.S1_at	BU871113	hypothetical protein	-	6e-6	At4g34110	PAB2 (POLY(A) BINDING 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.7225.1.S1_at	CF234583	hypothetical protein	-	1e-51	At1g22620	ATSAC1 (suppressor of actin 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.6266.1.S1_at	DN499531	hypothetical protein	-	3e-1	At4g10450	60S ribosomal protein L9 (RPL90D)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.115676.1.S1_at	BU822363	-	-	2e-1	At1g33980	Smg-4/UPF3 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.13499.1.S1_at	CK104585	multidrug resistance protein ABC transporter family	-	8e-28	At1g04120	ATMRP5	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.3	98.8	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.7	98.3	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.8	97.4	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.9	96.5	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.1	95.5	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.1	95.5	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.54	4e-151	533	PtpAffx.88428.1.A1_at	CV267177	hypothetical protein	-	2e+0	At1g15790	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.222338.1.S1_at	pmrna39684	chromatin remodeling complex subunit	-	9e-51	At1g03750	SWI2 (SWITCH 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	Ptp.138.1.S1_s_at	AJ306825.1	hypothetical protein	-	6e-42	At2g22670	IAA8	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	4e+0	32	PtpAffx.9796.1.A1_at	DN489629	-	-	4e+0	At3g21680	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e+0	32	PtpAffx.83148.1.S1_s_at	BU831402	hypothetical protein	-	0	At5g49460	ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e+0	32	PtpAffx.223231.1.S1_at	pmrna41113	hypothetical protein	-	3e+0	At4g22310	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	4e+0	32	PtpAffx.220280.1.S1_at	pmrna36650	hypothetical protein	-	2e+0	At1g67740	PSBY	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e+0	32	PtpAffx.212893.1.S1_at	pmrna25236	chromatin remodeling complex subunit	-	3e-3	At2g47620	ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e+0	32	PtpAffx.210971.1.S1_at	pmrna21552	hypothetical protein	-	2e-37	At1g54490	XRN4 (EXORIBONUCLEASE 4)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At5g62140	836334	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	1e+0	34	Glycine max	GmaAffx.71647.1.S1_at	BE057209	-	-	9e+0	At3g28223	-	C.G.	S.X.	Please select
0.04	4e-1	34	Hordeum vulgare	Contig4927_s_at	Contig4927	-	-	4e-1	At1g16880	uridylyltransferase-related	C.G.	S.X.	Please select
0.04	6e+0	32	Oryza sativa	Os12g0202800	9640.m00954	-	0-methyltransferase (EC 2.1.1.6) (Fragment)	7e-1	At4g35150	O-methyltransferase family 2 protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-1	36	Triticum aestivum	Ta.4052.2.A1_a_at	BJ213636	-	-	1e+0	At1g57610	unknown protein	C.G.	S.X.	Please select
0.04	3e+0	30	Vitis vinifera	1622695_at	CF414053	hypothetical protein LOC100267469	-	2e-2	At3g63230	unknown protein	C.G.	S.X.	Please select
0.04	5e+0	30	Zea mays	Zm.2884.1.S1_at	AW090890	hypothetical protein LOC100192085	-	1e+1	At5g28420	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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