CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.789.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 Ptp.789.1.S1_at CK089311 hypothetical protein - 8e-8 At2g41820 leucine-rich repeat transmembrane protein kinase, putative S.X. H.G.
0.67 91.1 Ptp.4669.1.S1_at CK088332 - - 8e-13 At3g53190 pectate lyase family protein S.X. H.G.
0.60 86.0 Ptp.7764.1.S1_at DN489656 hypothetical protein - 5e+0 At5g49170 unknown protein S.X. H.G.
0.55 82.2 Ptp.478.1.A1_at CK087253 hypothetical protein - 4e-1 At4g25410 DNA binding / transcription factor S.X. H.G.
0.35 59.7 Ptp.2544.1.A1_at CK087698 hypothetical protein - 1e-12 At3g24660 TMKL1 (transmembrane kinase-like 1) S.X. H.G.
0.30 52.0 PtpAffx.106134.1.S1_at DN495981 - - 5e-2 At2g17240 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.3 99.4 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
12.2 99.3 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
10.0 98.9 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
9.9 98.9 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.1 98.5 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.9 97.4 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.8 97.4 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.7 97.3 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.9 95.1 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 1e-71 270 PtpAffx.213333.1.S1_x_at pmrna26082 hypothetical protein - 8e-36 At2g41820 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.10 8e-58 224 PtpAffx.206122.1.S1_x_at pmrna12139 hypothetical protein - 5e-31 At2g41820 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.10 8e-58 224 PtpAffx.206122.1.S1_at pmrna12139 hypothetical protein - 5e-31 At2g41820 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.02 1e-1 38 PtpAffx.205829.1.S1_at pmrna11535 hypothetical protein - 7e-4 At1g19980 cytomatrix protein-related C.G. S.X.
0.03 4e-1 36 PtpAffx.249.600.S1_s_at CV240351 hypothetical protein - 4e-1 At3g13310 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.01 4e-1 36 PtpAffx.249.47.A1_s_at CV256610 - - 1e-3 At4g11650 ATOSM34 (osmotin 34) C.G. S.X.
0.02 4e-1 36 PtpAffx.201948.1.S1_at pmrna3882 hypothetical protein - 2e-4 At5g65380 ripening-responsive protein, putative C.G. S.X.
0.02 2e+0 34 PtpAffx.219750.1.S1_at pmrna35784 hypothetical protein - 1e-23 At5g03070 IMPA-9 (IMPORTIN ALPHA ISOFORM 9) C.G. S.X.
0.02 2e+0 34 PtpAffx.217285.1.S1_at pmrna32483 hypothetical protein - 5e-2 At3g56420 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 8e-8 57 Arabidopsis thaliana At2g41820 818781 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVA - - - C.G. S.X.
0.03 2e+0 34 Glycine max GmaAffx.73940.1.S1_at BM890931 - - 2e-1 At1g35210 unknown protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HVSMEl0010P10f_x_at HVSMEl0010P10f - - 2e+0 At1g35230 AGP5 (ARABINOGALACTAN-PROTEIN 5) C.G. S.X.
0.03 2e+0 34 Oryza sativa OsAffx.18764.2.S1_at - - - 0 C.G. S.X.
0.04 5e+0 32 Triticum aestivum TaAffx.30053.1.S1_at CA629695 - - 6e-1 At1g75700 HVA22G (HVA22-LIKE PROTEIN G) C.G. S.X.
0.03 5e+0 30 Vitis vinifera 1621131_at CF414322 - - 2e-7 At4g02730 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.04 2e+0 32 Zea mays Zm.4615.2.A1_at AI714747 - - 2e-1 At1g58420 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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