Gene omics information

Query gene ID	Ptp.788.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	88.1	Ptp.788.1.S1_at	CK089255	hypothetical protein	-	2e-38	At4g38240	CGL1 (COMPLEX GLYCAN LESS 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	Ptp.1730.1.A1_at	CK093317	-	-	5e+0	At5g62330	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	Ptp.607.1.S1_at	CK087237	hypothetical protein	-	1e-17	At5g54680	ILR3 (iaa-leucine resistant3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.78728.1.S1_at	DN495875	-	-	3e+0	Atmg01120	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.78103.1.A1_at	CF228445	-	-	3e+0	At4g02425	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.35480.1.S1_at	BU837763	hypothetical protein	-	8e-11	At1g18160	protein kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	Ptp.6388.1.S1_at	BI128431	hypothetical protein	-	6e-9	At2g42500	PP2A-4	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.2	96.8	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.0	96.6	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.4	95.9	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.4	95.9	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	0	769	PtpAffx.124719.1.S1_s_at	BU837218	hypothetical protein	-	3e-42	At4g38240	CGL1 (COMPLEX GLYCAN LESS 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.57	8e-177	621	PtpAffx.4431.5.S1_at	CX176188	hypothetical protein	-	6e-16	At4g38240	CGL1 (COMPLEX GLYCAN LESS 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.56	1e-147	523	PtpAffx.204372.1.S1_s_at	pmrna8591	hypothetical protein	-	1e-42	At4g38240	CGL1 (COMPLEX GLYCAN LESS 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-1	38	PtpAffx.19537.2.S1_s_at	CV225503	hypothetical protein	-	4e-104	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-1	38	PtpAffx.19537.2.S1_at	CV225503	hypothetical protein	-	4e-104	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-1	36	PtpAffx.50071.1.A1_at	CV260094	-	-	2e+0	At5g42405	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-1	36	PtpAffx.204857.1.S1_at	pmrna9601	hypothetical protein	-	1e-2	At5g28040	transcription regulator	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-1	36	PtpAffx.204857.1.S1_x_at	pmrna9601	hypothetical protein	-	1e-2	At5g28040	transcription regulator	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-1	36	PtpAffx.124466.1.S1_at	DN498429	hypothetical protein	-	1e-1	At5g28040	transcription regulator	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	2e-38	161	Arabidopsis thaliana	At4g38240	829981	CGL1 (COMPLEX GLYCAN LESS 1)	Encodes N-acetyl glucosaminyl transferase I, the first enzyme in the pathway of complex glycan biosynthesis.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.38	5e-64	246	Glycine max	GmaAffx.77010.1.S1_at	BE821775	-	-	2e-40	At4g38240	CGL1 (COMPLEX GLYCAN LESS 1)	C.G.	S.X.	Please select
0.05	9e-11	67	Hordeum vulgare	Contig15789_at	Contig15789	-	-	6e-6	At4g38240	CGL1 (COMPLEX GLYCAN LESS 1)	C.G.	S.X.	Please select
0.13	1e-12	75	Oryza sativa	Os02g0832800	AK101526.1	-	Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (EC 2.4.1.101)	5e-15	At4g38240	CGL1 (COMPLEX GLYCAN LESS 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	4e-8	59	Triticum aestivum	TaAffx.123762.1.S1_at	BJ317422	-	-	1e-3	At4g38240	CGL1 (COMPLEX GLYCAN LESS 1)	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1615383_at	BQ793432	hypothetical protein LOC100256151	-	1e-3	At4g32272	-	C.G.	S.X.	Please select
0.04	2e+1	30	Zea mays	ZmAffx.1189.1.A1_at	BE025258	-	-	8e-1	At3g04181	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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