CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.7787.1.S1_s_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 Ptp.7787.1.S1_s_at DN499212 - - 4e+0 At2g05642 - S.X. H.G.
0.61 87.0 Ptp.2558.1.S1_at CK096344 hypothetical protein - 0 At1g78900 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) S.X. H.G.
0.60 86.0 PtpAffx.135882.1.A1_at CV281275 hypothetical protein - 1e-7 At1g78420 protein binding / zinc ion binding S.X. H.G.
0.46 73.7 PtpAffx.12253.1.A1_at CV225881 hypothetical protein - 3e+0 At4g32960 unknown protein S.X. H.G.
0.44 71.9 Ptp.2672.1.A1_at CV254014 hypothetical protein - 1e-67 At1g51590 mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative S.X. H.G.
0.26 45.2 Ptp.5593.1.S1_at DN495608 hypothetical protein - 7e-15 At4g26240 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.5 96.1 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.0 92.9 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 1e-31 137 PtpAffx.216377.1.S1_at pmrna31119 hypothetical protein - 8e-4 At3g59770 SAC9 C.G. S.X.
0.02 9e-2 38 PtpAffx.213258.1.S1_at pmrna25938 hypothetical protein - 3e+0 At4g11140 CRF1 (CYTOKININ RESPONSE FACTOR 1) C.G. S.X.
0.02 4e-1 36 PtpAffx.153869.1.A1_at CV257639 hypothetical protein - 5e-7 At2g28690 unknown protein C.G. S.X.
0.03 4e-1 36 PtpAffx.146633.1.A1_at CV268848 hypothetical protein - 9e-33 At2g34860 EDA3 (embryo sac development arrest 3) C.G. S.X.
0.03 4e-1 36 Ptp.5107.1.S1_s_at CV278871 hypothetical protein - 5e-56 At2g34860 EDA3 (embryo sac development arrest 3) C.G. S.X.
0.01 1e+0 34 PtpAffx.225816.1.S1_x_at pmrna45425 BED finger-nbs resistance protein - 3e-1 At5g56470 FAD-dependent oxidoreductase family protein C.G. S.X.
0.03 1e+0 34 PtpAffx.224918.1.S1_at pmrna43845 NBS resistance protein - 1e-1 At5g56470 FAD-dependent oxidoreductase family protein C.G. S.X.
0.01 1e+0 34 PtpAffx.224917.1.S1_at pmrna43844 BED finger-nbs-lrr resistance protein - 6e-3 At5g37710 lipase class 3 family protein / calmodulin-binding heat-shock protein, putative C.G. S.X.
0.01 1e+0 34 PtpAffx.206802.1.S1_at pmrna13506 hypothetical protein - 4e-3 At1g52520 FRS6 (FAR1-related sequence 6) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e+0 32 Arabidopsis thaliana At2g05642 819430 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMB - - - C.G. S.X.
0.23 1e-4 48 Glycine max GmaAffx.1177.1.A1_at AI959969 - - 4e-3 At3g59770 SAC9 C.G. S.X.
0.03 1e-1 36 Hordeum vulgare HVSMEm0022I23r2_at HVSMEm0022I23r2 - - 1e+0 At5g67020 unknown protein C.G. S.X.
0.05 2e+0 34 Oryza sativa OsAffx.27978.1.S1_at - - - 0 C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.12452.2.S1_at BJ262185 - - 4e+0 At1g02450 NIMIN1 (NIM1-INTERACTING 1) C.G. S.X.
0.10 5e-9 59 Vitis vinifera 1612663_at CB971054 hypothetical protein LOC100250760 - 4e+0 At5g52600 AtMYB82 (myb domain protein 82) C.G. S.X.
0.02 2e+0 32 Zea mays Zm.4777.2.A1_at AI881313 - - 5e-1 At4g39770 trehalose-6-phosphate phosphatase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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