CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.777.1.A1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 80.5 Ptp.777.1.A1_at CV236864 - - 7e+0 At4g05530 IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1) S.X. H.G.
0.50 78.6 PtpAffx.206211.1.S1_at pmrna12333 hypothetical protein - 2e-19 At3g13060 - S.X. H.G.
0.38 63.7 Ptp.6835.1.A1_at CV245044 - - 1e+0 At3g25770 AOC2 (ALLENE OXIDE CYCLASE 2) S.X. H.G.
0.33 57.5 PtpAffx.29282.1.A1_at BP934395 hypothetical protein - 9e-13 At5g27450 MK (MEVALONATE KINASE) S.X. H.G.
0.29 50.5 PtpAffx.206211.1.S1_x_at pmrna12333 hypothetical protein - 2e-19 At3g13060 - S.X. H.G.
0.14 23.5 Ptp.6370.3.S1_a_at CK091400 hypothetical protein - 6e+0 At3g23635 RTFL13 (ROTUNDIFOLIA LIKE 13) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.2 97.6 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.7 97.3 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.7 97.3 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.5 96.1 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.2 95.6 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.59 0 660 PtpAffx.102151.1.A1_at CV235637 hypothetical protein - 4e+0 At2g17850 - C.G. S.X.
0.29 2e-148 525 Ptp.5438.1.S1_at CK106216 hypothetical protein - 1e-14 At1g80600 WIN1 (HOPW1-1-INTERACTING 1) C.G. S.X.
0.13 4e-8 59 PtpAffx.113243.1.S1_at CX653809 hypothetical protein - 1e-3 At1g80600 WIN1 (HOPW1-1-INTERACTING 1) C.G. S.X.
0.02 6e-1 36 PtpAffx.11401.5.A1_at CV280789 hypothetical protein - 2e+0 At1g59590 ZCF37 C.G. S.X.
0.02 6e-1 36 PtpAffx.11401.4.A1_s_at CK096815 hypothetical protein - 7e+0 At5g18130 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.7885.2.S1_at BI138978 hypothetical protein - 1e-103 At5g26360 chaperonin, putative C.G. S.X.
0.02 2e+0 34 PtpAffx.7885.1.S1_a_at CK111948 hypothetical protein - 2e-24 At5g26360 chaperonin, putative C.G. S.X.
0.02 2e+0 34 PtpAffx.7885.1.S1_at CK111948 hypothetical protein - 2e-24 At5g26360 chaperonin, putative C.G. S.X.
0.03 2e+0 34 PtpAffx.7885.3.S1_at BU836787 hypothetical protein - 5e-5 At5g26360 chaperonin, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e+0 32 Arabidopsis thaliana At4g05530 825905 IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1) Encodes a peroxisomal member of the short-chain dehydrogenase/reductase (SDR) family of enzymes. Loss of IBR1 function causes increased resistance to indole-3-butyric acid without affecting plant responses to IAA, NAA, and 2,4-D. This enzyme may be responsible for catalyzing a dehydrogenation step in the beta-oxidation-like conversion of IBA to IAA. - - - C.G. S.X.
0.17 3e-15 83 Glycine max Gma.2543.1.S1_at AI960145 - - 7e-20 At1g80600 WIN1 (HOPW1-1-INTERACTING 1) C.G. S.X.
0.09 9e-7 54 Hordeum vulgare Contig7023_at Contig7023 - - 3e+0 At5g65390 AGP7 C.G. S.X.
0.03 3e+0 34 Oryza sativa OsAffx.5829.1.S1_at - - - 0 C.G. S.X.
0.03 1e-4 48 Triticum aestivum Ta.5321.1.S1_at CA666614 - - 3e+0 At5g65390 AGP7 C.G. S.X.
0.03 8e+0 30 Vitis vinifera 1622206_at CF510827 hypothetical protein LOC100255112 - 1e+1 At5g66440 unknown protein C.G. S.X.
0.02 1e+1 30 Zea mays Zm.9848.1.A1_at BM341075 - - 1e+0 At5g23640 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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