Gene omics information

Query gene ID	Ptp.7764.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	Ptp.7764.1.S1_at	DN489656	hypothetical protein	-	5e+0	At5g49170	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.4669.1.S1_at	CK088332	-	-	8e-13	At3g53190	pectate lyase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.478.1.A1_at	CK087253	hypothetical protein	-	4e-1	At4g25410	DNA binding / transcription factor	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	Ptp.789.1.S1_at	CK089311	hypothetical protein	-	8e-8	At2g41820	leucine-rich repeat transmembrane protein kinase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.7158.1.S1_at	CV246958	-	-	8e+0	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.11483.2.A1_at	CK106946	hypothetical protein	-	7e-2	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.2	99.3	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
10.9	99.1	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
9.9	98.9	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
9.2	98.8	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
8.7	98.6	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
8.1	98.5	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.4	97.7	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.0	97.5	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.3	95.8	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1172	Ptp.7764.1.S1_s_at	DN489656	hypothetical protein	-	5e+0	At5g49170	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.63	1e-140	500	PtpAffx.18052.1.S1_at	CV263365	-	-	3e+0	At3g42148	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.32	2e-95	349	PtpAffx.207896.1.S1_at	pmrna15675	hypothetical protein	-	2e+0	At1g06320	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-1	36	PtpAffx.212518.1.S1_at	pmrna24513	hypothetical protein	-	7e-5	At5g24680	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.221509.1.S1_at	pmrna38428	-	-	4e-10	At3g21250	ATMRP6	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.213168.1.S1_at	pmrna25760	hypothetical protein	-	4e-1	At5g40750	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.209201.1.S1_at	pmrna18195	hypothetical protein	-	7e-20	At3g12740	ALIS1 (ALA-INTERACTING SUBUNIT 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.205943.1.S1_at	pmrna11795	hypothetical protein	-	2e-1	At5g39710	EMB2745 (EMBRYO DEFECTIVE 2745)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e+0	32	PtpAffx.92886.1.S1_at	CV237122	hypothetical protein	-	2e-7	At1g28120	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At5g49170	834976	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e+0	32	Glycine max	GmaAffx.32324.1.A1_at	BI968053	-	-	7e-1	At5g28630	glycine-rich protein	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	HW06J10u_s_at	HW06J10u	-	-	8e+0	At4g09984	LCR34 (Low-molecular-weight cysteine-rich 34)	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	OsAffx.26223.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Triticum aestivum	TaAffx.137523.1.A1_at	CD938973	-	-	4e+0	At4g17800	DNA-binding protein-related	C.G.	S.X.	Please select
0.03	2e-2	38	Vitis vinifera	1617188_at	CF515835	-	-	6e+0	At5g41960	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Zea mays	Zm.12396.1.S1_at	AY106879.1	hypothetical protein LOC100278085	-	5e+0	At5g03030	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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