Gene omics information

Query gene ID	Ptp.7632.1.S1_at
Gene name	ZIP transporter
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	87.0	Ptp.7632.1.S1_at	DN497977	ZIP transporter	-	2e-1	At5g59520	ZIP2	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.224333.1.S1_x_at	pmrna42787	hypothetical protein	-	1e-1	At1g74090	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	S.X.	H.G.	Please selecteFP Browser (expression)
0.59	84.9	PtpAffx.224333.1.S1_at	pmrna42787	hypothetical protein	-	1e-1	At1g74090	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.7764.1.S1_at	DN489656	hypothetical protein	-	5e+0	At5g49170	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	Ptp.789.1.S1_at	CK089311	hypothetical protein	-	8e-8	At2g41820	leucine-rich repeat transmembrane protein kinase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	Ptp.478.1.A1_at	CK087253	hypothetical protein	-	4e-1	At4g25410	DNA binding / transcription factor	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.106134.1.S1_at	DN495981	-	-	5e-2	At2g17240	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	Ptp.2482.1.S1_at	CF229547	phenylalanine amonnia lyase	-	2e-2	At2g37040	pal1 (Phe ammonia lyase 1)	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.3	99.8	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
9.3	98.8	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.5	98.3	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.2	98.1	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.9	98.0	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.7	97.9	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.2	97.6	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.6	97.2	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.3	96.9	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.7	96.3	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	8e-122	436	PtpAffx.204956.1.S1_at	pmrna9803	ZIP transporter	-	1e-4	At5g59520	ZIP2	C.G.	S.X.	Please selecteFP Browser (expression)
0.35	2e-8	59	PtpAffx.216993.1.S1_at	pmrna32091	hypothetical protein	-	9e-2	At1g55140	RNA binding / ribonuclease III	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e-2	38	PtpAffx.40916.1.S1_at	BU826440	-	-	2e+0	At5g17190	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	7e-2	38	PtpAffx.117597.1.S1_at	DN488121	-	-	1e+0	At5g64160	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	3e-1	36	PtpAffx.80454.1.A1_at	DN486101	-	-	3e+0	At3g56180	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.222553.1.S1_at	pmrna40067	ECOLI acriflavine resistance protein b	-	4e-3	At5g04470	SIM (SIAMESE)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.208533.1.S1_at	pmrna16931	hypothetical protein	-	2e-13	At5g18910	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.203022.1.S1_at	pmrna5982	hypothetical protein	-	1e-8	At4g17330	ATG2484-1	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.201792.1.S1_at	pmrna3570	hypothetical protein	-	9e-1	At1g76740	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e-1	36	Arabidopsis thaliana	At5g59520	836071	ZIP2	encodes a metal ion transporter whose expression is regulated by copper.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	GmaAffx.59620.1.S1_at	BI788344	-	-	8e-1	At5g16920	-	C.G.	S.X.	Please select
0.04	6e+0	30	Hordeum vulgare	Contig18447_at	Contig18447	-	-	2e-1	At4g29670	thioredoxin family protein	C.G.	S.X.	Please select
0.05	2e+0	34	Oryza sativa	OsAffx.8681.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e+0	32	Triticum aestivum	TaAffx.42456.1.S1_at	AJ615337	-	-	7e-1	At3g26310	CYP71B35	C.G.	S.X.	Please select
0.47	3e-19	93	Vitis vinifera	1618607_s_at	CB972339	hypothetical protein LOC100255358	-	1e-3	At1g55910	ZIP11 (ZINC TRANSPORTER 11 PRECURSOR)	C.G.	S.X.	Please select
0.03	5e+0	30	Zea mays	Zm.7687.1.A1_at	BM072867	hypothetical protein LOC100279009	-	7e-2	At5g47640	NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage