Gene omics information

Query gene ID	Ptp.7603.1.S1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	Ptp.7603.1.S1_at	DN494879	-	-	6e-2	At1g31120	KUP10	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.54760.1.A1_at	DN488946	hypothetical protein	-	3e-11	At5g28020	CYSD2 (CYSTEINE SYNTHASE D2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	Ptp.6822.1.S1_at	DN500216	-	-	5e+0	At5g26740	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.77707.1.A1_at	CK097241	-	-	4e-1	At1g33910	avirulence-responsive family protein / avirulence induced gene (AIG1) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	Ptp.6461.1.A1_at	CX282788	hypothetical protein	-	3e-50	At1g47830	clathrin coat assembly protein, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.135916.1.A1_at	CK096317	hypothetical protein	-	4e-8	At4g35530	phosphatidylinositolglycan-related	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.5	97.1	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.2	96.8	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.4	95.9	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	2e-2	40	PtpAffx.16235.1.A1_at	CV258216	hypothetical protein	-	9e-20	At1g31120	KUP10	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.219544.1.S1_s_at	pmrna35492	cc-nbs-lrr resistance protein /// cc-nbs-lrr resistance protein	-	1e+0	At5g65280	GCL1 (GCR2-LIKE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.210486.1.S1_at	pmrna20575	PAF1 complex component	-	4e-15	At5g61150	VIP4 (VERNALIZATION INDEPENDENCE 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	PtpAffx.157053.1.S1_at	CK107088	hypothetical protein	-	7e-9	At5g65930	ZWI (ZWICHEL)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e+0	32	PtpAffx.47524.1.S1_at	CV254539	hypothetical protein	-	1e-8	At3g15270	SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e+0	32	PtpAffx.223632.1.S1_s_at	pmrna41715	hypothetical protein	-	7e-26	At4g18905	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	6e+0	32	PtpAffx.219744.1.S1_x_at	pmrna35772	hypothetical protein	-	7e-2	At2g30970	ASP1 (ASPARTATE AMINOTRANSFERASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	6e+0	32	PtpAffx.219744.1.S1_at	pmrna35772	hypothetical protein	-	7e-2	At2g30970	ASP1 (ASPARTATE AMINOTRANSFERASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e+0	32	PtpAffx.215358.1.S1_at	pmrna29499	hypothetical protein	-	5e-2	At5g58470	TAF15b (TBP-ASSOCIATED FACTOR 15b)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	6e-2	38	Arabidopsis thaliana	At1g31120	839997	KUP10	potassium transporter	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	9e-5	48	Glycine max	GmaAffx.18686.1.S1_at	BU548864	-	-	5e-20	At1g31120	KUP10	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	HV12I14u_at	HV12I14u	-	-	4e+0	At5g50880	unknown protein	C.G.	S.X.	Please select
0.04	8e+0	32	Oryza sativa	Os04g0290700	9632.m02064	-	-	1e+1	At3g05858	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Triticum aestivum	Ta.3220.1.S1_at	BJ236781	-	-	4e+0	At5g50110	-	C.G.	S.X.	Please select
0.11	3e-7	54	Vitis vinifera	1607241_at	CB980618	hypothetical protein LOC100264706	-	7e-21	At2g35060	KUP11	C.G.	S.X.	Please select
0.05	3e-2	38	Zea mays	Zm.13502.1.A1_at	CA403391	hypothetical protein LOC100191398	-	9e-4	At2g35060	KUP11	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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