CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.759.1.S1_at

Gene name tubulin alpha-7 chain

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 Ptp.759.1.S1_at CV259673 tubulin alpha-7 chain - 1e-82 At4g14960 TUA6 S.X. H.G.
0.82 96.3 PtpAffx.2265.10.A1_a_at CV246443 hypothetical protein - 2e-4 At1g20693 HMGB2 (HIGH MOBILITY GROUP B 2) S.X. H.G.
0.81 96.1 PtpAffx.86796.1.A1_at DN490220 hypothetical protein - 1e-14 At2g26180 IQD6 (IQ-domain 6) S.X. H.G.
0.77 94.9 Ptp.6857.2.S1_s_at CA923790 hypothetical protein - 1e-1 At4g35620 CYCB2 S.X. H.G.
0.76 94.3 PtpAffx.210026.1.S1_at pmrna19760 hypothetical protein - 1e-4 At4g38070 bHLH family protein S.X. H.G.
0.73 93.6 PtpAffx.128825.2.S1_a_at CK096703 hypothetical protein - 4e-7 At5g67270 ATEB1C (microtubule end binding protein 1) S.X. H.G.
0.69 91.5 Ptp.4412.2.S1_s_at CV237391 hypothetical protein - 1e-57 At2g25880 AtAUR2 (AtAurora2) S.X. H.G.
0.67 91.1 PtpAffx.201265.1.S1_at pmrna2509 hypothetical protein - 5e-7 At3g20150 kinesin motor family protein S.X. H.G.
0.67 91.1 Ptp.6857.1.S1_s_at BU833205 hypothetical protein - 6e-9 At1g20590 cyclin, putative S.X. H.G.
0.67 91.1 PtpAffx.200879.1.S1_at pmrna1723 hypothetical protein - 2e-6 At2g26760 CYCB1 S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.2 98.8 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
7.1 98.1 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
7.1 98.1 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.9 98.0 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.0 96.6 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.9 96.5 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.5 96.1 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.5 96.1 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.60 2e-175 617 Ptp.1787.1.S1_s_at CV225870 tubulin alpha-5 chain - 0 At4g14960 TUA6 C.G. S.X.
0.60 2e-129 464 Ptp.1895.1.S1_at AY229881.1 - - 0 At1g50010 TUA2 C.G. S.X.
0.34 3e-84 313 PtpAffx.692.3.A1_at CV275152 tubulin alpha-5 chain - 8e-157 At1g04820 TUA4 C.G. S.X.
0.34 4e-68 260 Ptp.2416.2.S1_s_at CV230713 tubulin alpha-3 chain - 9e-166 At4g14960 TUA6 C.G. S.X.
0.56 7e-61 236 PtpAffx.148282.1.S1_s_at AJ779144 tubulin alpha-1 chain - 1e-135 At1g04820 TUA4 C.G. S.X.
0.56 7e-61 236 PtpAffx.148282.1.S1_at AJ779144 - - 1e-135 At1g04820 TUA4 C.G. S.X.
0.20 3e-35 151 Ptp.2416.1.A1_at CV226264 tubulin alpha-3 chain - 9e-91 At4g14960 TUA6 C.G. S.X.
0.12 3e-29 131 PtpAffx.207089.1.S1_at pmrna14052 - - 1e-9 At1g04820 TUA4 C.G. S.X.
0.20 4e-19 97 PtpAffx.108443.1.A1_at CV240362 - - 2e-22 At1g50010 TUA2 C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.65 1e-82 307 Arabidopsis thaliana At4g14960 827154 TUA6 Encodes an alpha-tubulin isoform required for right handed helical growth. - - - C.G. S.X.
0.51 1e-89 331 Glycine max Gma.16674.1.S1_s_at AW350953 - - 0 At1g50010 TUA2 C.G. S.X.
0.43 1e-16 87 Hordeum vulgare Contig902_x_at Contig902 - - 0 At1g50010 TUA2 C.G. S.X.
0.43 4e-35 151 Oryza sativa Os11g0247300 AK105080.1 - Tubulin alpha-1 chain (Alpha-1 tubulin) 0 At1g50010 TUA2 C.G. S.X.
0.58 2e-100 367 Triticum aestivum Ta.812.4.S1_at BJ237929 alpha tubulin-3A - 0 At1g50010 TUA2 C.G. S.X.
0.60 8e-125 446 Vitis vinifera 1618413_at BQ797853 hypothetical protein LOC100256600 - 0 At4g14960 TUA6 C.G. S.X.
0.53 3e-91 335 Zea mays Zm.16535.2.A1_s_at CF062633 hypothetical protein LOC100276314 - 0 At1g50010 TUA2 C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage