Gene omics information

Query gene ID Ptp.7547.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9799.9Ptp.7547.1.S1_atBI120806hypothetical protein-3e-29At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)S.X.H.G.
0.2950.5PtpAffx.213097.1.S1_s_atpmrna25629hypothetical protein-8e-29At5g52410unknown proteinS.X.H.G.
0.2747.1PtpAffx.158765.1.S1_atCN519725hypothetical protein-2e-6At3g52950CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing proteinS.X.H.G.
0.2543.6PtpAffx.202784.1.S1_x_atpmrna5536hypothetical protein-2e-124At1g10940SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4)S.X.H.G.
0.2543.6PtpAffx.144348.2.S1_atCF229054hypothetical protein-6e-20At4g32551LUG (LEUNIG)S.X.H.G.
0.2034.6PtpAffx.144348.1.S1_atCK091378--2e-12At4g32551LUG (LEUNIG)S.X.H.G.
0.1932.7PtpAffx.95687.1.A1_atDN496546hypothetical protein-4e-4At2g25010unknown proteinS.X.H.G.
0.1932.7PtpAffx.106168.1.S1_atDN494299--2e+0At2g34900IMB1 (IMBIBITION-INDUCIBLE 1)S.X.H.G.
0.1932.7Ptp.3511.1.S1_s_atDN492443hypothetical protein-5e-1At2g41280M10S.X.H.G.
0.1729.1PtpAffx.86064.1.S1_atCV279515hypothetical protein-3e-24At5g65720NFS1S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.096.6GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
3.894.9GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
3.794.7GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
3.193.2GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
3.092.9GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.992.5GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
2.892.1GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
2.791.8GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.590.9GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.590.9GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.028e-342PtpAffx.89950.1.S1_atCK318312hypothetical protein-6e-63At1g70310SPDS2 (spermidine synthase 2)C.G.S.X.
0.033e-240PtpAffx.36888.1.S1_atCV274825hypothetical protein-2e-2At5g24105AGP41 (ARABINOGALACTAN-PROTEIN 41)C.G.S.X.
0.045e-136PtpAffx.56712.1.A1_atCV255047hypothetical protein-2e-11At5g11510MYB3R-4 (myb domain protein 3R-4)C.G.S.X.
0.025e-136PtpAffx.5224.1.A1_atCV276226hypothetical protein-3e-6At4g31800WRKY18C.G.S.X.
0.035e-136PtpAffx.207982.1.S1_s_atpmrna15845hypothetical protein-5e-28At1g13580LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)C.G.S.X.
0.035e-136PtpAffx.207982.1.S1_atpmrna15845hypothetical protein-5e-28At1g13580LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)C.G.S.X.
0.035e-136PtpAffx.158215.1.A1_atBP934643hypothetical protein-3e-32At2g25620protein phosphatase 2C, putative / PP2C, putativeC.G.S.X.
0.022e+034PtpAffx.54055.1.S1_atAJ777852hypothetical protein-5e+0At5g24105AGP41 (ARABINOGALACTAN-PROTEIN 41)C.G.S.X.
0.022e+034PtpAffx.52044.1.S1_atBU879652hypothetical protein-1e-47At5g14590isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putativeC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.383e-29129Arabidopsis thalianaAt5g53120835392SPDS3 (SPERMIDINE SYNTHASE 3)encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.---C.G.S.X.
0.514e-54212Glycine maxGmaAffx.87912.1.S1_atAI736825--6e-3At1g70310SPDS2 (spermidine synthase 2)C.G.S.X.
0.144e-21101Hordeum vulgareContig1210_atContig1210--2e-16At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.144e-1893Oryza sativaOs06g0528600AB098063.1-Spermidine synthase 1 (EC 2.5.1.16) (Putrescineaminopropyltransferase 1) (SPDSY 1)1e-8At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.201e-1067Triticum aestivumTa.7196.2.S1_a_atCD875513--2e-2At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.032e-342Vitis vinifera1619538_atCB344030hypothetical protein LOC100258627-2e-9At2g27290unknown proteinC.G.S.X.
0.101e-23109Zea maysZm.6006.1.A1_atAY110392.1spermidine synthase 1-7e-14At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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