Gene omics information

Query gene ID	Ptp.7514.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	94.1	Ptp.7514.1.S1_at	CK109314	hypothetical protein	-	9e-152	Atcg00520	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.77	94.9	PtpAffx.32519.1.S1_s_at	CK112302	-	-	3e-3	Atcg00520	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.75	94.1	Ptp.7518.1.S1_at	DN483594	hypothetical protein	-	0	Atcg00120	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.71	92.6	PtpAffx.2270.1.A1_s_at	CV282036	-	-	1e-163	Atcg00130	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.129071.1.S1_at	CA821826	hypothetical protein	-	2e-59	Atcg00720	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.219575.1.S1_s_at	pmrna35532	hypothetical protein	-	6e-56	Atcg00120	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.222174.1.S1_s_at	pmrna39422	-	-	0	Atcg00120	-	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.7	96.3	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.4	95.9	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.1	95.5	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3	93.7	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2	93.5	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9	92.5	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	4e-96	353	Ptp.3717.2.S1_at	BU886642	-	-	1e-7	Atcg00510	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.22	7e-61	236	PtpAffx.32519.1.S1_s_at	CK112302	-	-	3e-3	Atcg00520	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.200268.1.S1_at	pmrna526	hypothetical protein	-	1e-25	At5g13390	NEF1 (NO EXINE FORMATION 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e+0	34	PtpAffx.9604.1.S1_at	DN487082	-	-	9e-2	At4g36420	ribosomal protein L12 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e+0	34	PtpAffx.3156.1.A1_s_at	CV256349	hypothetical protein	-	1e-8	At3g06810	IBR3 (IBA-RESPONSE 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e+0	34	PtpAffx.24613.1.A1_s_at	CV253623	hypothetical protein	-	2e-19	At1g17680	transcription factor-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e+0	34	PtpAffx.224873.1.S1_at	pmrna43768	-	-	2e-6	At5g51830	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e+0	34	PtpAffx.222799.1.S1_at	pmrna40459	hypothetical protein	-	4e-1	At3g16360	AHP4 (HPT PHOSPHOTRANSMITTER 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e+0	34	PtpAffx.216376.1.S1_at	pmrna31115	hypothetical protein	-	2e-8	At1g17680	transcription factor-related	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	9e-152	537	Arabidopsis thaliana	Atcg00520	-	-	Encodes a protein required for photosystem I assembly and stability. In cyanobacteria, loss of function mutation in this gene increases PSII/PSI ratio without any influence on photoautotrophic growth.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-1	38	Glycine max	GmaAffx.38110.1.S1_at	BU764143	-	-	2e-1	At3g60647	unknown protein	C.G.	S.X.	Please select
0.14	4e-38	159	Hordeum vulgare	HVSMEc0011A03f_at	HVSMEc0011A03f	-	-	1e-23	Atcg00520	-	C.G.	S.X.	Please select
0.33	7e-74	280	Oryza sativa	OsAffx.32257.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.23	6e-42	173	Triticum aestivum	TaAffx.6885.1.S1_at	CA671515	-	-	2e-27	Atcg00520	-	C.G.	S.X.	Please select
0.13	0	696	Vitis vinifera	1620102_at	CF514700	-	-	0	Atcg00540	-	C.G.	S.X.	Please select
0.33	2e-86	319	Zea mays	ZmAffx.1465.1.S1_at	11990232-32	-	-	9e-60	Atcg00520	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage