CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.7478.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 84.2 Ptp.7478.1.S1_at BU866961 hypothetical protein - 2e-3 At5g02220 unknown protein S.X. H.G.
0.67 91.1 PtpAffx.219775.1.S1_x_at pmrna35842 hypothetical protein - 5e-1 At5g03380 heavy-metal-associated domain-containing protein S.X. H.G.
0.56 83.9 PtpAffx.28701.2.S1_s_at BU867887 hypothetical protein - 1e-13 At5g01520 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.50 78.6 PtpAffx.84646.1.S1_at DN483684 hypothetical protein - 2e+0 At4g32208 - S.X. H.G.
0.46 73.7 PtpAffx.132883.1.S1_at BI072375 hypothetical protein - 2e-1 At4g10430 - S.X. H.G.
0.43 69.7 PtpAffx.22200.2.S1_at CV241652 hypothetical protein - 2e-19 At5g26200 mitochondrial substrate carrier family protein S.X. H.G.
0.32 55.2 Ptp.3530.1.S1_at CV262873 hypothetical protein - 1e-1 At5g25280 serine-rich protein-related S.X. H.G.
0.30 52.0 PtpAffx.49298.2.S1_s_at AJ768916 hypothetical protein - 9e-2 At2g36320 zinc finger (AN1-like) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.8 99.3 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
12.2 99.3 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
11.1 99.1 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.8 98.0 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.4 97.7 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.6 97.2 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.3 96.9 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.3 96.9 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9 87.2 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.50 2e-152 539 Ptp.7112.1.S1_s_at CX181950 hypothetical protein - 2e+0 At5g09980 PROPEP4 (Elicitor peptide 4 precursor) C.G. S.X.
0.50 2e-152 539 Ptp.7112.1.S1_at CX181950 hypothetical protein - 2e+0 At5g09980 PROPEP4 (Elicitor peptide 4 precursor) C.G. S.X.
0.49 5e-119 428 PtpAffx.4533.1.S1_at CV242797 hypothetical protein - 7e-2 At1g35181 unknown protein C.G. S.X.
0.29 3e-71 270 Ptp.7478.2.S1_s_at CX183266 hypothetical protein - 5e+0 At3g55170 60S ribosomal protein L35 (RPL35C) C.G. S.X.
0.01 2e-1 38 PtpAffx.224722.1.S1_at pmrna43534 hypothetical protein - 1e-12 At4g21390 B120 C.G. S.X.
0.01 2e-1 38 PtpAffx.209881.1.S1_at pmrna19467 hypothetical protein - 7e-11 At1g29340 PUB17 (PLANT U-BOX 17) C.G. S.X.
0.02 2e-1 38 PtpAffx.200832.1.S1_x_at pmrna1623 - - 2e-3 At4g08370 proline-rich extensin-like family protein C.G. S.X.
0.03 2e-1 38 PtpAffx.14975.1.S1_at CK094461 hypothetical protein - 3e+0 At1g46336 unknown protein C.G. S.X.
0.03 2e-1 38 PtpAffx.111497.1.S1_at CK087230 - - 5e+0 At5g14740 CA2 (CARBONIC ANHYDRASE 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-3 44 Arabidopsis thaliana At5g02220 831792 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.08 1e-5 52 Glycine max GmaAffx.91072.1.S1_s_at CF806797 - - 1e+0 At5g65480 unknown protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HVSMEm0022K13r2_at HVSMEm0022K13r2 - - 1e+0 At5g35100 peptidyl-prolyl cis-trans isomerase C.G. S.X.
0.02 1e+0 36 Oryza sativa Os12g0106200 AK109211.1 - Protein of unknown function DUF260 domaincontaining protein 1e-3 At2g30130 ASL5 C.G. S.X.
0.03 5e-1 36 Triticum aestivum TaAffx.24778.1.S1_at CA712507 - - 4e+0 At5g07840 ankyrin repeat family protein C.G. S.X.
0.08 3e-9 61 Vitis vinifera 1619278_at CB976494 hypothetical protein LOC100260963 - 2e-1 At1g36675 glycine-rich protein C.G. S.X.
0.02 1e+1 30 Zea mays Zm.9904.2.A1_a_at BM334819 hypothetical protein LOC100193383 - 5e+0 At2g30120 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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