CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.7433.1.S1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 Ptp.7433.1.S1_at CV267931 - - 1e-48 At5g17170 ENH1 (enhancer of sos3-1) S.X. H.G.
0.67 91.1 Ptp.1122.1.S1_at AJ778652 hypothetical protein - 3e-92 At5g30510 RPS1 (RIBOSOMAL PROTEIN S1) S.X. H.G.
0.57 84.2 PtpAffx.151180.1.S1_at CX654538 one helix protein 2 - 4e-26 At1g34000 OHP2 (ONE-HELIX PROTEIN 2) S.X. H.G.
0.50 78.6 PtpAffx.3070.1.A1_at CV277508 hypothetical protein - 2e-21 At4g05090 inositol monophosphatase family protein S.X. H.G.
0.50 78.6 PtpAffx.32901.1.A1_at CV230978 hypothetical protein - 2e-9 At3g17470 RelA/SpoT domain-containing protein / calcium-binding EF-hand family protein S.X. H.G.
0.38 63.7 PtpAffx.9811.1.A1_at BU811742 - - 2e-28 At1g22630 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.3 99.3 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
10.5 99.0 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
9.1 98.7 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.8 97.4 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.9 96.5 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.8 96.4 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.7 96.3 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.97 0 2153 Ptp.7433.1.S1_s_at CV267931 hypothetical protein - 1e-48 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
0.64 1e-160 567 PtpAffx.133398.1.A1_at CV278665 hypothetical protein - 8e-27 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
0.02 2e-1 38 PtpAffx.204937.1.S1_at pmrna9773 hypothetical protein - 9e-1 At5g24313 unknown protein C.G. S.X.
0.01 9e-1 36 PtpAffx.6610.1.A2_a_at CV263107 hypothetical protein - 3e-39 At3g63450 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
0.01 9e-1 36 PtpAffx.6610.1.A1_a_at CV234438 hypothetical protein - 3e-39 At3g63450 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
0.01 9e-1 36 PtpAffx.6610.1.A1_x_at CV234438 hypothetical protein - 3e-39 At3g63450 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
0.01 9e-1 36 PtpAffx.6610.1.A1_at CV234438 - - 3e-39 At3g63450 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
0.01 9e-1 36 PtpAffx.224695.1.S1_at pmrna43500 hypothetical protein - 1e-5 At4g04500 protein kinase family protein C.G. S.X.
0.01 9e-1 36 PtpAffx.224695.1.S1_s_at pmrna43500 hypothetical protein - 1e-5 At4g04500 protein kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 1e-48 194 Arabidopsis thaliana At5g17170 831581 ENH1 (enhancer of sos3-1) F:protein binding, electron carrier activity, metal ion binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;BPO - - - C.G. S.X.
0.40 4e-92 339 Glycine max Gma.13129.1.S1_at CD404336 - - 2e-62 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
0.15 2e-17 89 Hordeum vulgare Contig4014_at Contig4014 - - 5e-10 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
0.20 7e-33 143 Oryza sativa Os08g0162600 AK060121.1 - Rubredoxin-type Fe(Cys)4 protein family protein 6e-22 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
0.13 2e-22 107 Triticum aestivum Ta.5590.2.S1_at CK214552 - - 7e-7 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
0.42 5e-119 426 Vitis vinifera 1610210_at CA812095 hypothetical protein LOC100263114 - 8e-28 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
0.19 2e-14 79 Zea mays Zm.3400.1.S1_at CN845120 - - 2e-9 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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