Gene omics information

Query gene ID	Ptp.7424.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	Ptp.7424.1.S1_at	BU861469	hypothetical protein	-	7e-52	At1g12840	DET3 (DE-ETIOLATED 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.6424.1.S1_at	DN493610	hypothetical protein	-	1e-7	At3g24160	PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.159172.1.S1_s_at	BU897020	hypothetical protein	-	1e-10	At3g56740	ubiquitin-associated (UBA)/TS-N domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.136990.1.S1_at	BU885285	-	-	1e-19	At1g72880	acid phosphatase survival protein SurE, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.150471.1.S1_s_at	CN523838	hypothetical protein	-	2e-74	At2g20420	succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.1066.10.S1_a_at	CX178751	hypothetical protein	-	2e-34	At5g05010	clathrin adaptor complexes medium subunit-related	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.8	94.9	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.48	0	799	PtpAffx.1148.1.S1_a_at	CV261357	hypothetical protein	-	1e-64	At1g12840	DET3 (DE-ETIOLATED 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	8e-3	42	PtpAffx.39550.1.S1_at	CK087678	hypothetical protein	-	4e-1	At5g05510	protein kinase-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.75275.1.A1_at	CV276591	-	-	5e-1	At2g04550	IBR5 (INDOLE-3-BUTYRIC ACID RESPONSE 5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-1	36	PtpAffx.70836.1.S1_at	CX170355	chromatin remodeling complex subunit	-	2e-24	At5g66750	CHR1 (CHROMATIN REMODELING 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.224260.1.S1_at	pmrna42656	hypothetical protein	-	2e-26	At3g54230	nucleic acid binding / nucleotide binding / zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.223530.1.S1_s_at	pmrna41575	hypothetical protein	-	1e-26	At3g54230	nucleic acid binding / nucleotide binding / zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.223530.1.S1_at	pmrna41575	hypothetical protein	-	1e-26	At3g54230	nucleic acid binding / nucleotide binding / zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.222075.1.S1_at	pmrna39281	hypothetical protein	-	5e-60	At1g20300	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.219706.1.S1_at	pmrna35699	hypothetical protein	-	2e-8	At1g31740	BGAL15 (beta-galactosidase 15)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	7e-52	204	Arabidopsis thaliana	At1g12840	837840	DET3 (DE-ETIOLATED 3)	Encodes subunit C of the vacuolar H(+)-ATPase (V-ATPase). Bound and phosphorylated by AtWNK8.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.34	1e-10	67	Glycine max	GmaAffx.76133.1.S1_at	BE021794	-	-	2e-1	At1g12840	DET3 (DE-ETIOLATED 3)	C.G.	S.X.	Please select
0.03	1e+1	30	Hordeum vulgare	EBro08_SQ004_J24_at	EBro08_SQ004_J24	-	-	3e+0	At3g04250	F-box family protein-related	C.G.	S.X.	Please select
0.14	2e-7	57	Oryza sativa	Os05g0593100	AK061855.1	-	Vacuolar ATP synthase subunit C (EC 3.6.3.14)(V-ATPase C subunit) (Vacuolar proton pump C subunit)	2e-10	At1g12840	DET3 (DE-ETIOLATED 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.23	7e-12	71	Triticum aestivum	TaAffx.113230.1.S1_at	CA617075	-	-	2e-8	At1g12840	DET3 (DE-ETIOLATED 3)	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1616585_at	CB349358	hypothetical protein LOC100254351	-	5e-27	At1g24360	3-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductase	C.G.	S.X.	Please select
0.15	7e-13	73	Zea mays	Zm.4630.2.A1_at	CK347497	hypothetical protein LOC100273246	-	8e-7	At1g12840	DET3 (DE-ETIOLATED 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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