CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.7234.1.S1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 96.0 Ptp.7234.1.S1_at DN492699 - - 2e+0 At5g27750 F-box family protein S.X. H.G.
0.61 87.0 PtpAffx.116749.1.A1_at CK090030 hypothetical protein - 1e-8 At3g10230 LYC (LYCOPENE CYCLASE) S.X. H.G.
0.44 71.9 PtpAffx.141654.1.S1_at AJ768599 - - 3e+0 At5g38290 peptidyl-tRNA hydrolase family protein S.X. H.G.
0.44 71.9 Ptp.1232.1.S1_at BI122968 hypothetical protein - 2e-19 At1g49630 ATPREP2 (ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2) S.X. H.G.
0.40 67.0 Ptp.3133.1.S1_s_at DN490108 hypothetical protein - 1e-24 At4g34980 SLP2 S.X. H.G.
0.38 63.7 Ptp.7879.1.S1_at DN500503 - - 2e+0 At1g08710 F-box family protein S.X. H.G.
0.29 50.5 PtpAffx.132098.1.A1_at DN490875 hypothetical protein - 2e-5 At1g17220 FUG1 (fu-gaeri1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.1 99.6 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
14.8 99.5 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
11.7 99.2 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
9.9 98.9 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.0 98.0 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.7 97.9 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e-2 42 PtpAffx.220067.1.S1_at pmrna36354 hypothetical protein - 3e-7 At1g32340 NHL8 C.G. S.X.
0.02 2e-1 38 Ptp.5869.2.A1_at CV231859 - - 8e-2 At1g32710 cytochrome c oxidase subunit VIb family C.G. S.X.
0.02 8e-1 36 PtpAffx.4043.1.S1_at CX658760 hypothetical protein - 6e-50 At1g56500 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.01 8e-1 36 PtpAffx.222521.1.S1_s_at pmrna40018 chromatin remodeling complex subunit - 3e+0 At5g43175 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.01 8e-1 36 PtpAffx.222521.1.S1_at pmrna40018 chromatin remodeling complex subunit - 3e+0 At5g43175 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.01 8e-1 36 PtpAffx.206189.1.S1_at pmrna12286 hypothetical protein - 4e-3 At2g19260 ELM2 domain-containing protein / PHD finger family protein C.G. S.X.
0.01 8e-1 36 PtpAffx.202521.1.S1_at pmrna5047 hypothetical protein - 8e-92 At2g31660 SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2) C.G. S.X.
0.01 3e+0 34 PtpAffx.47744.1.S1_at CV253501 hypothetical protein - 7e-1 At4g32900 aminoacyl-tRNA hydrolase C.G. S.X.
0.02 3e+0 34 PtpAffx.3355.1.A1_at DN484651 - - 1e+0 At5g62780 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At5g27750 832837 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.02 3e+0 34 Glycine max HgAffx.15330.1.S1_at CB281664 - - 4e+0 At2g38360 PRA1.B4 (PRENYLATED RAB ACCEPTOR 1.B4) C.G. S.X.
0.03 4e+0 32 Hordeum vulgare Contig7664_at Contig7664 - - 6e-1 At2g17420 NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) C.G. S.X.
0.02 5e+0 34 Oryza sativa OsAffx.32226.1.A1_at - - - 0 C.G. S.X.
0.03 4e-2 40 Triticum aestivum TaAffx.4735.1.S1_at CA733370 - - 1e+0 At2g41233 unknown protein C.G. S.X.
0.02 7e-1 34 Vitis vinifera 1621077_s_at CB975305 hypothetical protein LOC100256381 - 2e-17 At3g51880 HMGB1 (HIGH MOBILITY GROUP B 1) C.G. S.X.
0.02 1e+0 34 Zea mays ZmAffx.1457.1.S1_at 11990232-24 - - 1e-83 Atcg00380 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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