Gene omics information

Query gene ID Ptp.7231.1.A1_at
Gene name 4-coumarate-coa ligase
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6388.1Ptp.7231.1.A1_atCV2757034-coumarate-coa ligase-1e-11At4g051604-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeS.X.H.G.
0.8397.0PtpAffx.200612.1.S1_atpmrna1199hypothetical protein-9e-6At1g79900BAC2S.X.H.G.
0.7794.9PtpAffx.137415.1.S1_atDN498331hypothetical protein-2e-6At5g65380ripening-responsive protein, putativeS.X.H.G.
0.7192.6PtpAffx.157185.1.S1_a_atBP929447hypothetical protein-2e-31At2g35390ribose-phosphate pyrophosphokinase 1 / phosphoribosyl diphosphate synthetase 1 (PRSI)S.X.H.G.
0.6791.1PtpAffx.209971.1.S1_atpmrna19663hypothetical protein-2e-16At3g15350glycosyltransferase family 14 protein / core-2/I-branching enzyme family proteinS.X.H.G.
0.5078.6Ptp.5423.1.A1_atCV240924hypothetical protein-7e-6At5g65380ripening-responsive protein, putativeS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
13.899.4GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
6.998.0GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
6.898.0GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
6.197.6GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
5.997.4GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.797.3GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.696.2GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.594.3GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.594.3GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
3.293.5GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.133e-1067PtpAffx.213524.1.S1_atpmrna26432hypothetical protein-5e-1At3g46430unknown proteinC.G.S.X.
0.022e-448Ptp.3043.1.S1_atAF041049.14-Coumarate:CoA ligase-3e-13At1g516804CL1 (4-COUMARATE:COA LIGASE 1)C.G.S.X.
0.022e-448Ptp.3043.1.S1_s_atAF041049.14-Coumarate:CoA ligase-3e-13At1g516804CL1 (4-COUMARATE:COA LIGASE 1)C.G.S.X.
0.021e-242PtpAffx.58121.1.S1_atCK090747hypothetical protein-5e-32At1g67730YBR159C.G.S.X.
0.026e-240PtpAffx.609.3.A1_atCV253212hypothetical protein-4e-1At3g26561unknown proteinC.G.S.X.
0.026e-240PtpAffx.609.1.A1_a_atCV249516hypothetical protein-6e-28At2g1973060S ribosomal protein L28 (RPL28A)C.G.S.X.
0.026e-240PtpAffx.609.1.A1_s_atCV249516hypothetical protein-6e-28At2g1973060S ribosomal protein L28 (RPL28A)C.G.S.X.
0.032e-138PtpAffx.213525.1.S1_atpmrna26433--5e-1At1g205004-coumarate-CoA ligaseC.G.S.X.
0.029e-136PtpAffx.79574.1.A1_atCV283894--3e-1At4g16140proline-rich family proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.231e-1171Arabidopsis thalianaAt4g051608258644-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeEncodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0 and C7:0) as well as even-numbered long-chain fatty acids (C14:0, C16:0 and C18:0). At4g05160 was also able to catalyze the conversion of OPC-6:0 to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.---C.G.S.X.
0.419e-78291Glycine maxGma.5032.1.S1_atBI970519--5e-31At4g051604-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeC.G.S.X.
0.099e-1167Hordeum vulgareContig9988_atContig9988--2e-13At4g051604-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeC.G.S.X.
0.126e-963Oryza sativaOs03g0152400CR279600-4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)(4-coumaroyl-CoA synthase 1) (Clone 4CL14) (Fragment)6e-12At4g051604-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeC.G.S.X.
0.102e-1067Triticum aestivumTaAffx.106960.1.S1_atCD932951--2e-2At1g62940ACOS5 (ACYL-COA SYNTHETASE 5)C.G.S.X.
0.295e-76284Vitis vinifera1606753_atCF403699hypothetical protein LOC100267198-2e-23At4g051604-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeC.G.S.X.
0.024e+032Zea maysZm.6989.1.S1_atAW506741--1e+0At4g23340oxidoreductase, 2OG-Fe(II) oxygenase family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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