CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.7181.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 Ptp.7181.1.S1_at DN488307 hypothetical protein - 2e-6 At1g49570 peroxidase, putative S.X. H.G.
0.73 93.6 Ptp.6077.1.S1_s_at BI122891 hypothetical protein - 1e+0 At4g21920 unknown protein S.X. H.G.
0.57 84.2 Ptp.2226.1.S1_at CK089488 hypothetical protein - 3e-3 At1g64160 disease resistance-responsive family protein / dirigent family protein S.X. H.G.
0.40 67.0 Ptp.987.1.S1_at BU895364 - - 5e-29 At3g54420 ATEP3 S.X. H.G.
0.33 57.5 Ptp.6340.1.S1_at BU888207 hypothetical protein - 2e-2 At5g59000 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.25 43.6 PtpAffx.204632.1.S1_at pmrna9105 hypothetical protein - 1e-1 At5g50200 WR3 (WOUND-RESPONSIVE 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.7 99.7 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
9.6 98.9 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
9.1 98.7 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
7.1 98.1 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.6 97.9 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.5 97.8 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.7 97.3 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.4 95.9 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 2e-4 48 Ptp.3639.1.S1_at CV274871 hypothetical protein - 1e-2 At1g49570 peroxidase, putative C.G. S.X.
0.02 1e-2 42 PtpAffx.2017.6.A1_s_at CN523220 adenosylhomocysteinase/s-adenosyl-l-homocysteine hydrolase - 1e-59 At4g13940 MEE58 (MATERNAL EFFECT EMBRYO ARREST 58) C.G. S.X.
0.03 5e-2 40 PtpAffx.84979.1.S1_at CV254755 hypothetical protein - 2e-4 At5g06720 peroxidase, putative C.G. S.X.
0.02 2e-1 38 PtpAffx.55376.1.S1_at AY953377.1 hypothetical protein - 6e-1 At5g58390 peroxidase, putative C.G. S.X.
0.01 2e-1 38 PtpAffx.43372.1.A1_at CV257319 hypothetical protein - 3e-3 At5g06720 peroxidase, putative C.G. S.X.
0.03 2e-1 38 PtpAffx.25548.2.S1_at D30653.1 hypothetical protein - 2e-4 At4g08780 peroxidase, putative C.G. S.X.
0.03 2e-1 38 PtpAffx.25548.2.S1_x_at D30653.1 hypothetical protein - 2e-4 At4g08780 peroxidase, putative C.G. S.X.
0.02 2e-1 38 PtpAffx.206163.1.S1_at pmrna12232 hypothetical protein - 5e-13 At2g41480 electron carrier/ heme binding / peroxidase C.G. S.X.
0.02 2e-1 38 PtpAffx.134284.1.A1_at CV240771 hypothetical protein - 4e-1 At3g48630 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-6 54 Arabidopsis thaliana At1g49570 841381 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB - - - C.G. S.X.
0.10 1e-2 42 Glycine max GmaAffx.8704.2.S1_at BG042982 - - 9e-2 At5g14130 peroxidase, putative C.G. S.X.
0.02 4e+0 32 Hordeum vulgare HVSMEm0005P05r2_at HVSMEm0005P05r2 - - 1e+0 At3g59880 unknown protein C.G. S.X.
0.03 4e+0 34 Oryza sativa Os12g0589200 9640.m03895 - - 2e-2 At3g01860 unknown protein C.G. S.X.
0.03 1e-5 52 Triticum aestivum Ta.25363.1.A1_at CD491278 - - 7e-16 At3g51895 SULTR3 C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1613624_at CB970090 - - 1e+0 At5g15670 F-box family protein C.G. S.X.
0.02 4e+0 32 Zea mays ZmAffx.728.1.A1_at AI740010 hypothetical protein LOC100216633 - 3e+0 At2g21180 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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