Gene omics information

Query gene ID	Ptp.7158.1.S1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	83.9	Ptp.7158.1.S1_at	CV246958	-	-	8e+0	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.2013.1.S1_at	CV252156	-	-	6e-3	At5g15230	GASA4 (GAST1 PROTEIN HOMOLOG 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.249.4.A1_at	AY780431.1	-	-	9e-13	At2g47520	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	Ptp.1541.1.S1_at	CK109591	-	-	8e-4	At1g29670	GDSL-motif lipase/hydrolase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	Ptp.2465.1.S1_at	CK092035	cinnamoyl CoA reductase-like protein	-	1e-2	At5g19440	cinnamyl-alcohol dehydrogenase, putative (CAD)	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	Ptp.3815.1.S1_at	DN488408	hypothetical protein	-	2e+0	At3g36659	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.1	98.7	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
9.1	98.7	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.5	98.3	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.1	98.1	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.9	98.0	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.4	97.7	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.3	97.7	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.1	97.6	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.8	97.4	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.6	97.2	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.93	0	1683	Ptp.7158.1.S1_s_at	CV246958	-	-	8e+0	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.86	0	847	PtpAffx.828.2.A1_at	CV274981	-	-	2e+0	At4g15030	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.57	7e-118	424	PtpAffx.828.1.A1_x_at	CV274450	hypothetical protein	-	1e-1	At2g26430	RCY1 (ARGININE-RICH CYCLIN 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-1	38	PtpAffx.214204.1.S1_at	pmrna27643	hypothetical protein	-	2e-118	At2g25320	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.205966.1.S1_at	pmrna11836	hypothetical protein	-	1e-2	At5g28630	glycine-rich protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.205966.1.S1_s_at	pmrna11836	hypothetical protein	-	1e-2	At5g28630	glycine-rich protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e-1	36	PtpAffx.95134.1.A1_at	CV258693	-	-	4e-1	At3g61210	embryo-abundant protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e-1	36	PtpAffx.209115.1.S1_at	pmrna18032	hypothetical protein	-	3e-1	At5g37870	seven in absentia (SINA) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.223943.1.S1_at	pmrna42168	hypothetical protein	-	1e+1	At5g62440	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e+0	32	Arabidopsis thaliana	At5g64310	836552	AGP1 (ARABINOGALACTAN PROTEIN 1)	Encodes arabinogalactan-protein (AGP1).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	7e-1	36	Glycine max	GmaAffx.81790.1.S1_at	BG508508	-	-	6e-3	At2g21060	ATGRP2B (GLYCINE-RICH PROTEIN 2B)	C.G.	S.X.	Please select
0.03	4e+0	32	Hordeum vulgare	HV_CEb0005M21r2_s_at	HV_CEb0005M21r2	-	-	3e+0	At1g15800	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	38	Oryza sativa	Os01g0163100	NM_184489.1	-	-	9e-1	At5g46790	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Triticum aestivum	TaAffx.59094.1.S1_at	CA608104	-	-	5e+0	At1g36622	unknown protein	C.G.	S.X.	Please select
0.05	4e-5	48	Vitis vinifera	1613467_at	CF212805	hypothetical protein LOC100260626	-	2e-5	At2g34700	pollen Ole e 1 allergen and extensin family protein	C.G.	S.X.	Please select
0.02	5e-2	38	Zea mays	Zm.8229.1.S1_at	BM073362	hypothetical protein LOC100192960 /// thioredoxin	-	5e-1	At3g06730	thioredoxin family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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