CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.7049.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 Ptp.7049.1.S1_at DN498757 hypothetical protein - 2e-2 At1g73120 unknown protein S.X. H.G.
0.83 97.0 Ptp.3979.1.S1_at DN489014 hypothetical protein - 2e+0 At5g23590 DNAJ heat shock N-terminal domain-containing protein S.X. H.G.
0.67 91.1 PtpAffx.205355.1.S1_at pmrna10601 hypothetical protein - 6e-13 At3g50330 HEC2 (HECATE 2) S.X. H.G.
0.67 91.1 PtpAffx.213510.1.S1_at pmrna26410 SAUR family protein - 3e-11 At2g37030 auxin-responsive family protein S.X. H.G.
0.50 78.6 PtpAffx.207964.1.S1_at pmrna15812 hypothetical protein - 6e+0 At5g42785 unknown protein S.X. H.G.
0.46 73.7 PtpAffx.223979.1.S1_s_at pmrna42205 hypothetical protein - 3e+0 At5g56420 F-box family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
37.4 100.0 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
22.0 99.8 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
20.1 99.7 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
7.2 98.1 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
0.2 49.7 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
0.2 49.7 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
0.1 42.9 GSM327359 Populus balsamifera_20071015_Seedling_continuous_light_6d_3 GSE13990 Populus balsamifera developmental tissue series
0.0 33.6 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 PtpAffx.549.2.S1_at CN523310 hypothetical protein - 1e-10 At5g51720 unknown protein C.G. S.X.
0.03 1e+0 34 PtpAffx.206223.1.S1_at pmrna12352 hypothetical protein - 5e+0 At5g14500 aldose 1-epimerase family protein C.G. S.X.
0.01 1e+0 34 PtpAffx.201843.1.S1_at pmrna3668 hypothetical protein - 2e-55 At1g77280 protein kinase family protein C.G. S.X.
0.03 1e+0 34 Ptp.5013.1.S1_s_at CK318622 hypothetical protein - 3e-7 At5g51720 unknown protein C.G. S.X.
0.03 1e+0 34 Ptp.5013.1.S1_at CK318622 hypothetical protein - 3e-7 At5g51720 unknown protein C.G. S.X.
0.01 1e+0 34 Ptp.3133.1.S1_s_at DN490108 hypothetical protein - 1e-24 At4g34980 SLP2 C.G. S.X.
0.03 6e+0 32 PtpAffx.88902.1.A1_at CV247260 - - 8e-1 At2g06850 EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE) C.G. S.X.
0.02 6e+0 32 PtpAffx.60804.1.S1_at CV277798 - - 8e-31 At2g23390 - C.G. S.X.
0.03 6e+0 32 PtpAffx.38659.1.S1_at CV225777 hypothetical protein - 4e+0 At5g59240 40S ribosomal protein S8 (RPS8B) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 2e-2 40 Arabidopsis thaliana At1g73120 843643 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:unknown;P - - - C.G. S.X.
0.04 4e-1 36 Glycine max GmaAffx.65098.1.S1_at BQ741863 - - 3e+0 At5g40500 unknown protein C.G. S.X.
0.05 2e+0 32 Hordeum vulgare HB28K21r_x_at HB28K21r - - 4e+0 At2g23310 ATRER1C1 C.G. S.X.
0.02 2e+0 34 Oryza sativa Os03g0752800 AY332478.1 - Transcription factor, MADS-box domain containingprotein 2e-16 At5g60910 AGL8 (agamous-like 8) C.G. S.X.
0.03 3e-1 36 Triticum aestivum Ta.10015.1.A1_at BJ283630 - - 5e-6 At1g32780 alcohol dehydrogenase, putative C.G. S.X.
0.03 5e+0 30 Vitis vinifera 1620318_at AF196485.1 beta-tubulin - 9e-56 At5g62700 TUB3 C.G. S.X.
0.03 7e+0 30 Zea mays Zm.6754.1.A1_at AI396158 hypothetical protein LOC100279965 - 4e-2 At4g36530 hydrolase, alpha/beta fold family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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