Gene omics information

Query gene ID Ptp.7044.1.S1_at
Gene name light-harvesting complex I protein Lhca5
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7794.9Ptp.7044.1.S1_atDN489077light-harvesting complex I protein Lhca5-4e-11At1g45474LHCA5S.X.H.G.
0.8397.0Ptp.1447.1.S1_atCV280897hypothetical protein-1e-1At2g31305INH3 (INHIBITOR-3)S.X.H.G.
0.4471.9Ptp.5284.1.S1_s_atCV283267hypothetical protein-2e+0At4g26701DNA binding / DNA topoisomerase type IS.X.H.G.
0.4471.9PtpAffx.83902.1.A1_atCK107717hypothetical protein-2e+0At5g42110unknown proteinS.X.H.G.
0.3863.7Ptp.890.1.S1_atCV233720hypothetical protein-5e-24At4g01050hydroxyproline-rich glycoprotein family proteinS.X.H.G.
0.3153.7Ptp.5203.1.S1_atCV283749hypothetical protein-3e-8At5g14910heavy-metal-associated domain-containing proteinS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
11.499.2GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
4.796.3GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
4.596.1GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
4.596.1GSM372099Clone3200_LPI5_N+_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.195.5GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
4.095.3GSM372045Clone1979_LPI5_N+_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.794.7GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.694.5GSM328063Populus x canescens leaf control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
3.694.5GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.594.3GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue series
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.188e-35149PtpAffx.202061.1.S1_atpmrna4112light-harvesting complex I protein Lhca5-8e-5At1g45474LHCA5C.G.S.X.
0.022e-138PtpAffx.224689.1.S1_x_atpmrna43491hypothetical protein-5e-4At4g16070lipase class 3 family proteinC.G.S.X.
0.022e-138PtpAffx.224689.1.S1_atpmrna43491hypothetical protein-5e-4At4g16070lipase class 3 family proteinC.G.S.X.
0.013e+034PtpAffx.209451.1.S1_atpmrna18726hypothetical protein-6e-36At1g23480ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3)C.G.S.X.
0.023e+034PtpAffx.20709.1.S1_atBU884860hypothetical protein-6e+0At5g50110-C.G.S.X.
0.013e+034PtpAffx.206190.1.S1_atpmrna12288hypothetical protein-8e-17At4g29940PRHA (PATHOGENESIS RELATED HOMEODOMAIN PROTEIN A)C.G.S.X.
0.013e+034PtpAffx.204783.1.S1_atpmrna9420hypothetical protein-8e-10At5g58480glycosyl hydrolase family 17 proteinC.G.S.X.
0.013e+034PtpAffx.200062.1.S1_atpmrna115hypothetical protein-2e+0At2g40475unknown proteinC.G.S.X.
0.011e+132PtpAffx.95928.1.S1_atCV227318hypothetical protein-2e-31At5g46170F-box family proteinC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.334e-1169Arabidopsis thalianaAt1g45474841099LHCA5Encodes a component of the light harvesting complex of photosystem I.---C.G.S.X.
0.261e-24115Glycine maxGma.12238.1.S1_atAW596295--2e-16At1g45474LHCA5C.G.S.X.
0.095e-961Hordeum vulgareContig7863_atContig7863--6e+0At5g28450chlorophyll A-B binding protein, chloroplast, putative / LHCI type II CAB, putativeC.G.S.X.
0.065e-654Oryza sativaOs02g0764500AK066291.1-Lhca5 protein8e-3At1g45474LHCA5C.G.S.X.
0.067e-756Triticum aestivumTa.881.1.S1_a_atCK213344--9e+0At4g24974-C.G.S.X.
0.283e-40165Vitis vinifera1611464_atCF215949hypothetical protein LOC100255844-2e-8At1g45474LHCA5C.G.S.X.
0.033e-136Zea maysZm.3895.2.A1_atBM349822chlorophyll a-b binding protein 4-2e-12At3g47470LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage