Gene omics information

Query gene ID	Ptp.7044.1.S1_at
Gene name	light-harvesting complex I protein Lhca5
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	94.9	Ptp.7044.1.S1_at	DN489077	light-harvesting complex I protein Lhca5	-	4e-11	At1g45474	LHCA5	S.X.	H.G.	Please selecteFP Browser (expression)
0.83	97.0	Ptp.1447.1.S1_at	CV280897	hypothetical protein	-	1e-1	At2g31305	INH3 (INHIBITOR-3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.5284.1.S1_s_at	CV283267	hypothetical protein	-	2e+0	At4g26701	DNA binding / DNA topoisomerase type I	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.83902.1.A1_at	CK107717	hypothetical protein	-	2e+0	At5g42110	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	Ptp.890.1.S1_at	CV233720	hypothetical protein	-	5e-24	At4g01050	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	Ptp.5203.1.S1_at	CV283749	hypothetical protein	-	3e-8	At5g14910	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.4	99.2	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.7	96.3	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.1	95.5	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.7	94.7	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6	94.5	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5	94.3	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	8e-35	149	PtpAffx.202061.1.S1_at	pmrna4112	light-harvesting complex I protein Lhca5	-	8e-5	At1g45474	LHCA5	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.224689.1.S1_x_at	pmrna43491	hypothetical protein	-	5e-4	At4g16070	lipase class 3 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.224689.1.S1_at	pmrna43491	hypothetical protein	-	5e-4	At4g16070	lipase class 3 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.209451.1.S1_at	pmrna18726	hypothetical protein	-	6e-36	At1g23480	ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.20709.1.S1_at	BU884860	hypothetical protein	-	6e+0	At5g50110	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.206190.1.S1_at	pmrna12288	hypothetical protein	-	8e-17	At4g29940	PRHA (PATHOGENESIS RELATED HOMEODOMAIN PROTEIN A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.204783.1.S1_at	pmrna9420	hypothetical protein	-	8e-10	At5g58480	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.200062.1.S1_at	pmrna115	hypothetical protein	-	2e+0	At2g40475	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+1	32	PtpAffx.95928.1.S1_at	CV227318	hypothetical protein	-	2e-31	At5g46170	F-box family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	4e-11	69	Arabidopsis thaliana	At1g45474	841099	LHCA5	Encodes a component of the light harvesting complex of photosystem I.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.26	1e-24	115	Glycine max	Gma.12238.1.S1_at	AW596295	-	-	2e-16	At1g45474	LHCA5	C.G.	S.X.	Please select
0.09	5e-9	61	Hordeum vulgare	Contig7863_at	Contig7863	-	-	6e+0	At5g28450	chlorophyll A-B binding protein, chloroplast, putative / LHCI type II CAB, putative	C.G.	S.X.	Please select
0.06	5e-6	54	Oryza sativa	Os02g0764500	AK066291.1	-	Lhca5 protein	8e-3	At1g45474	LHCA5	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	7e-7	56	Triticum aestivum	Ta.881.1.S1_a_at	CK213344	-	-	9e+0	At4g24974	-	C.G.	S.X.	Please select
0.28	3e-40	165	Vitis vinifera	1611464_at	CF215949	hypothetical protein LOC100255844	-	2e-8	At1g45474	LHCA5	C.G.	S.X.	Please select
0.03	3e-1	36	Zea mays	Zm.3895.2.A1_at	BM349822	chlorophyll a-b binding protein 4	-	2e-12	At3g47470	LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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