CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.6941.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 87.0 Ptp.6941.1.S1_at CF233332 hypothetical protein - 1e-5 At1g27290 unknown protein S.X. H.G.
0.50 78.6 Ptp.6857.1.S1_at BU833205 hypothetical protein - 6e-9 At1g20590 cyclin, putative S.X. H.G.
0.50 78.6 PtpAffx.9889.1.A1_at BP931052 hypothetical protein - 1e+0 At2g43520 ATTI2 S.X. H.G.
0.33 57.5 PtpAffx.90122.1.S1_at CK092046 - - 4e-2 At1g68620 hydrolase S.X. H.G.
0.22 38.3 Ptp.5409.1.S1_at BP936883 - - 1e-11 At2g47610 60S ribosomal protein L7A (RPL7aA) S.X. H.G.
0.20 34.6 Ptp.2149.1.S1_at CK089576 hypothetical protein - 2e-3 At2g43150 proline-rich extensin-like family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.7 99.7 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
14.6 99.5 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
9.1 98.7 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.0 98.0 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.72 0 1233 Ptp.6941.2.S1_s_at CV281873 hypothetical protein - 7e-6 At1g27290 unknown protein C.G. S.X.
0.41 8e-103 375 PtpAffx.5796.1.A1_at CX185221 hypothetical protein - 7e-10 At1g27290 unknown protein C.G. S.X.
0.27 2e-50 200 Ptp.3708.1.S1_s_at BU879922 hypothetical protein - 8e-2 At1g27290 unknown protein C.G. S.X.
0.01 9e-1 36 PtpAffx.249.388.A1_at CV270856 - - 5e-9 At1g67090 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) C.G. S.X.
0.01 9e-1 36 PtpAffx.249.373.A1_s_at CV282889 hypothetical protein - 4e-9 At5g38430 ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) C.G. S.X.
0.02 9e-1 36 PtpAffx.249.15.A1_x_at CV237039 hypothetical protein - 2e-28 At1g67090 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) C.G. S.X.
0.02 9e-1 36 PtpAffx.249.159.A1_a_at CV277218 hypothetical protein - 8e-9 At1g67090 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) C.G. S.X.
0.02 9e-1 36 Ptp.5160.3.A1_x_at CV281283 hypothetical protein - 5e-7 At1g79040 PSBR (photosystem II subunit R) C.G. S.X.
0.01 9e-1 36 Ptp.1465.5.S1_x_at CV131427 hypothetical protein - 5e-23 At1g67090 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 1e-5 52 Arabidopsis thaliana At1g27290 839618 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P - - - C.G. S.X.
0.09 1e-9 65 Glycine max GmaAffx.90691.1.S1_s_at CF806416 - - 3e-7 At1g27290 unknown protein C.G. S.X.
0.03 5e+0 32 Hordeum vulgare HVSMEn0024O03f_s_at HVSMEn0024O03f - - 3e+0 At5g40370 glutaredoxin, putative C.G. S.X.
0.02 3e-1 38 Oryza sativa Os04g0567600 9632.m04639 - - 1e+0 At5g42635 glycine-rich protein C.G. S.X.
0.03 2e-1 38 Triticum aestivum TaAffx.10904.1.S1_at AL821879 - - 4e+0 At1g65820 microsomal glutathione s-transferase, putative C.G. S.X.
0.13 3e-12 71 Vitis vinifera 1607298_a_at CF372301 hypothetical protein LOC100243721 - 5e-1 At3g57958 unknown protein C.G. S.X.
0.02 3e-1 36 Zea mays Zm.14798.1.S1_at CF627333 - - 1e-4 At3g01950 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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