Gene omics information

Query gene ID	Ptp.6905.1.A1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.79	95.3	Ptp.6905.1.A1_s_at	CV233868	hypothetical protein	-	1e-7	At5g54580	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	Ptp.4237.1.S1_at	DN499915	hypothetical protein	-	2e-13	At5g59850	40S ribosomal protein S15A (RPS15aF)	S.X.	H.G.	Please selecteFP Browser (expression)
0.58	84.2	PtpAffx.26833.1.A1_s_at	CV251572	hypothetical protein	-	2e-2	At5g63150	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.1106.1.A1_s_at	CV236443	-	-	3e-17	At1g15930	40S ribosomal protein S12 (RPS12A)	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.122937.1.A1_s_at	DN490378	hypothetical protein	-	7e-5	At3g25520	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)	S.X.	H.G.	Please selecteFP Browser (expression)
0.52	79.4	PtpAffx.878.1.S1_at	BP929910	hypothetical protein	-	2e-99	At3g11250	60S acidic ribosomal protein P0 (RPP0C)	S.X.	H.G.	Please selecteFP Browser (expression)
0.51	78.9	Ptp.4460.1.S1_at	CV253940	hypothetical protein	-	2e-56	At1g70310	SPDS2 (spermidine synthase 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.41	67.7	PtpAffx.1025.1.A1_x_at	CV251532	hypothetical protein	-	2e-21	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.993.4.S1_a_at	CF229606	hypothetical protein	-	7e-67	At3g04400	emb2171 (embryo defective 2171)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.4048.1.S1_s_at	CF232419	hypothetical protein	-	2e-27	At3g18740	60S ribosomal protein L30 (RPL30C)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.4	98.2	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.3	96.9	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.4	94.0	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3	93.7	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9	92.5	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8	92.1	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	9e-145	513	PtpAffx.1476.2.A1_at	CV245573	hypothetical protein	-	5e-4	At5g54580	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-2	40	PtpAffx.99162.1.S1_at	CV279989	hypothetical protein	-	1e+0	At2g17870	cold-shock DNA-binding family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-2	40	PtpAffx.983.1.A1_at	CX172753	hypothetical protein	-	5e-10	At5g64180	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-2	40	PtpAffx.9731.1.S1_at	CV255821	hypothetical protein	-	1e+1	At5g44582	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-2	40	PtpAffx.9792.1.S1_s_at	BP930774	hypothetical protein	-	7e-24	At1g49760	PAB8 (POLY(A) BINDING PROTEIN 8)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-2	40	PtpAffx.97498.1.S1_at	CV246186	-	-	8e-2	At4g09890	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-2	40	PtpAffx.95744.1.A1_at	CV238553	-	-	1e-41	At3g55280	RPL23AB (RIBOSOMAL PROTEIN L23AB)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-2	40	PtpAffx.95314.1.A1_at	CV252554	-	-	4e-2	At1g64930	CYP89A7	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-2	40	PtpAffx.95404.1.A1_at	CV247625	-	-	1e+0	At2g28210	ATACA2 (ALPHA CARBONIC ANHYDRASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	1e-7	57	Arabidopsis thaliana	At5g54580	835546	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	8e-19	95	Glycine max	Gma.7350.1.S1_at	BU547120	-	-	3e-5	At5g54580	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.13	2e-10	65	Hordeum vulgare	HI05K16u_s_at	HI05K16u	-	-	9e-1	At1g24470	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.12	1e-12	75	Oryza sativa	Os08g0139000	AK070704.1	-	RNA-binding glycine rich protein (RGP-2)	1e+0	At4g33610	glycine-rich protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	2e-15	83	Triticum aestivum	Ta.30799.1.S1_at	CA663961	-	-	1e-1	At5g54580	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.08	8e-3	40	Vitis vinifera	1610769_at	CF211187	hypothetical protein LOC100254516	-	4e-4	At5g54580	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.04	1e-2	40	Zea mays	Zm.2397.1.A1_at	AY104240.1	nucleolin	-	2e+0	At1g64710	alcohol dehydrogenase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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