CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.6835.1.A1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 97.0 Ptp.6835.1.A1_at CV245044 - - 1e+0 At3g25770 AOC2 (ALLENE OXIDE CYCLASE 2) S.X. H.G.
0.50 78.6 PtpAffx.147961.1.S1_at CX170988 - - 2e-18 At3g52870 calmodulin-binding family protein S.X. H.G.
0.44 71.9 Ptp.777.1.A1_at CV236864 - - 7e+0 At4g05530 IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1) S.X. H.G.
0.40 67.0 PtpAffx.204155.1.S1_s_at pmrna8187 hypothetical protein - 2e+0 At5g07790 unknown protein S.X. H.G.
0.23 40.5 PtpAffx.22348.1.S1_s_at AI165753 - - 1e-22 At5g48380 leucine-rich repeat family protein / protein kinase family protein S.X. H.G.
0.15 25.3 PtpAffx.206211.1.S1_x_at pmrna12333 hypothetical protein - 2e-19 At3g13060 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.2 98.1 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.3 95.8 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.3 95.8 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 3e-94 345 PtpAffx.219818.1.S1_at pmrna35946 - - 2e-31 At3g52870 calmodulin-binding family protein C.G. S.X.
0.10 1e-4 48 PtpAffx.48360.1.S1_at CX173860 hypothetical protein - 1e+0 At3g14020 NF-YA6 (NUCLEAR FACTOR Y, SUBUNIT A6) C.G. S.X.
0.05 4e-1 36 PtpAffx.135336.1.S1_at DN496303 hypothetical protein - 4e-3 At3g57740 protein kinase family protein C.G. S.X.
0.03 2e+0 34 PtpAffx.221615.1.S1_at pmrna38588 hypothetical protein - 1e+0 At5g12390 FIS1B (FISSION 1B) C.G. S.X.
0.04 2e+0 34 PtpAffx.221616.1.S1_s_at pmrna38589 hypothetical protein - 4e+0 At5g25210 unknown protein C.G. S.X.
0.04 2e+0 34 PtpAffx.221616.1.S1_at pmrna38589 hypothetical protein - 4e+0 At5g25210 unknown protein C.G. S.X.
0.01 2e+0 34 PtpAffx.202490.1.S1_at pmrna4990 hypothetical protein - 8e-8 At2g32530 ATCSLB03 C.G. S.X.
0.02 2e+0 34 Ptp.405.1.A1_s_at CV231529 ABC transporter family protein - 5e-13 At5g05010 clathrin adaptor complexes medium subunit-related C.G. S.X.
0.02 7e+0 32 PtpAffx.82257.1.A1_at CV254356 - - 1e+0 At2g26940 zinc finger (C2H2 type) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 Arabidopsis thaliana At3g25770 822168 AOC2 (ALLENE OXIDE CYCLASE 2) Encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is induced during senescence, a process that involves jasmonic acid signalling pathway. Note: Nomenclature for Arabidopsis allene oxide cyclase 2 (AOC2, AT3G25770) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC2 (AT3G25770) is also referred to as AOC3 in He et al. 2002 Plant Physiology, 128:876-884. - - - C.G. S.X.
0.28 2e-15 83 Glycine max Gma.13039.1.A1_at CD399750 - - 3e+0 At1g30260 - C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HVSMEi0008B17r2_at HVSMEi0008B17r2 - - 9e+0 At5g20736 unknown protein C.G. S.X.
0.03 2e+0 34 Oryza sativa OsAffx.25770.1.S1_at - - - 0 C.G. S.X.
0.03 1e+0 34 Triticum aestivum TaAffx.39473.1.A1_at BG904319 - - 3e+0 At5g61170 40S ribosomal protein S19 (RPS19C) C.G. S.X.
0.04 2e-2 38 Vitis vinifera 1616430_at CA810723 - - 2e-7 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) C.G. S.X.
0.03 2e+0 32 Zea mays Zm.4262.1.S1_at CF625817 hypothetical protein LOC100279864 - 1e+0 At1g65330 PHE1 (PHERES1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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