Gene omics information

Query gene ID	Ptp.6822.1.S1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	86.0	Ptp.6822.1.S1_at	DN500216	-	-	5e+0	At5g26740	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.77707.1.A1_at	CK097241	-	-	4e-1	At1g33910	avirulence-responsive family protein / avirulence induced gene (AIG1) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.7603.1.S1_at	DN494879	-	-	6e-2	At1g31120	KUP10	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.26481.1.S1_a_at	BU869849	hypothetical protein	-	3e-30	At1g33490	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	Ptp.7659.1.S1_at	DN488737	hypothetical protein	-	2e-12	At3g15410	leucine-rich repeat family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	Ptp.3446.1.S1_at	DN502970	hypothetical protein	-	1e-1	At3g11773	electron carrier/ protein disulfide oxidoreductase	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.3	96.9	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.7	96.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.3	95.8	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.1	95.5	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	1e-44	180	PtpAffx.128559.3.A1_a_at	DN491414	hypothetical protein	-	2e-12	At3g05940	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.23	2e-6	54	Ptp.1691.1.S1_at	CK092979	-	-	7e-2	At3g31960	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e-2	40	PtpAffx.46068.1.A1_a_at	CV242864	hypothetical protein	-	9e-21	At5g05830	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.56064.1.A1_at	CV280271	-	-	6e-6	At2g31200	ADF6 (ACTIN DEPOLYMERIZING FACTOR 6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.5366.2.A1_at	CK090447	hypothetical protein	-	1e-51	At1g11750	CLPP6	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.2072.2.A1_at	CK091188	hypothetical protein	-	1e+0	At5g17670	hydrolase, acting on ester bonds	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e+0	34	PtpAffx.205055.1.S1_at	pmrna10015	hypothetical protein	-	1e-2	At5g67390	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.203735.1.S1_at	pmrna7381	hypothetical protein	-	9e-15	At1g61690	phosphoinositide binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.203543.1.S1_at	pmrna7034	hypothetical protein	-	1e+0	At3g56580	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	5e+0	32	Arabidopsis thaliana	At5g26740	832714	unknown protein	F:unknown;P:unknown;C:endomembrane system;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	7e-3	42	Glycine max	Gma.6819.1.A1_at	BE821975	-	-	4e-3	At3g05940	unknown protein	C.G.	S.X.	Please select
0.04	1e-1	36	Hordeum vulgare	HT07O12u_s_at	HT07O12u	-	-	1e+1	At5g45469	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	Oryza sativa	Os.52473.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e-1	36	Triticum aestivum	Ta.7563.2.S1_at	CN012909	-	-	3e-1	At4g28840	unknown protein	C.G.	S.X.	Please select
0.10	1e-7	56	Vitis vinifera	1610842_a_at	CB969447	hypothetical protein LOC100244638	-	1e+0	At4g27280	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zea mays	Zm.6300.1.S1_at	AI691313	ATBRCA1	-	7e+0	At3g03870	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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