CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.6795.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 88.1 Ptp.6795.1.S1_at DN489696 hypothetical protein - 5e-7 At1g75310 AUL1 S.X. H.G.
0.44 71.9 PtpAffx.15957.2.S1_at CK318435 hypothetical protein - 2e+0 At1g16740 ribosomal protein L20 family protein S.X. H.G.
0.30 52.0 PtpAffx.24277.1.A1_at CV265969 hypothetical protein - 3e-3 At5g49700 DNA-binding protein-related S.X. H.G.
0.21 36.5 PtpAffx.105803.2.S1_a_at CV225405 hypothetical protein - 7e-14 At2g35110 GRL (GNARLED) S.X. H.G.
0.20 34.6 PtpAffx.45820.1.A1_s_at CK093458 hypothetical protein - 4e-1 At4g28040 nodulin MtN21 family protein S.X. H.G.
0.19 32.7 Ptp.3679.1.S1_s_at CK092681 hypothetical protein - 6e-1 At2g18328 ATRL4 (ARABIDOPSIS RAD-LIKE 4) S.X. H.G.
0.16 26.9 PtpAffx.8725.2.A1_at CV232347 hypothetical protein - 2e+1 At5g40530 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.0 98.0 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
6.9 98.0 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.6 97.2 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.9 96.5 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 0 648 PtpAffx.201647.1.S1_at pmrna3265 hypothetical protein - 3e-18 At1g75310 AUL1 C.G. S.X.
0.39 2e-71 270 PtpAffx.28096.1.S1_s_at CK106849 hypothetical protein - 2e-10 At1g75310 AUL1 C.G. S.X.
0.10 2e-47 190 PtpAffx.225684.1.S1_x_at pmrna45212 hypothetical protein - 8e-28 At4g36520 heat shock protein binding C.G. S.X.
0.10 2e-47 190 PtpAffx.225684.1.S1_s_at pmrna45212 hypothetical protein - 8e-28 At4g36520 heat shock protein binding C.G. S.X.
0.06 9e-28 125 PtpAffx.207369.1.S1_at pmrna14620 hypothetical protein - 2e-3 At4g36520 heat shock protein binding C.G. S.X.
0.26 7e-16 85 PtpAffx.217619.1.S1_at pmrna32959 hypothetical protein - 2e+0 At1g07900 LBD1 (LOB DOMAIN-CONTAINING PROTEIN 1) C.G. S.X.
0.17 7e-10 65 PtpAffx.207370.1.S1_x_at pmrna14621 hypothetical protein - 2e-21 At4g36520 heat shock protein binding C.G. S.X.
0.06 3e-3 44 PtpAffx.58828.1.S1_at CA925945 - - 3e-5 At4g12780 heat shock protein binding C.G. S.X.
0.02 2e-1 38 PtpAffx.56651.1.A1_at CV236471 hypothetical protein - 8e-12 At5g57560 TCH4 (Touch 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 5e-7 56 Arabidopsis thaliana At1g75310 843868 AUL1 F:heat shock protein binding;P:protein folding;C:unknown;MOBFPVA - - - C.G. S.X.
0.27 5e-14 79 Glycine max Gma.1050.1.S1_at BG359698 - - 6e-19 At4g36520 heat shock protein binding C.G. S.X.
0.08 5e-2 38 Hordeum vulgare HV05N08u_at HV05N08u - - 1e+0 At5g48860 unknown protein C.G. S.X.
0.05 1e-2 42 Oryza sativa Os01g0355500 AK119920.1 - TolA family protein 2e-37 At4g12780 heat shock protein binding C.G. S.X.
0.10 1e-10 67 Triticum aestivum Ta.26000.1.A1_at CD454520 - - 6e+0 At5g03220 transcriptional co-activator-related C.G. S.X.
0.04 3e-2 38 Vitis vinifera 1616031_at CF207395 - - 5e-48 At4g12780 heat shock protein binding C.G. S.X.
0.15 5e-5 48 Zea mays Zm.5889.1.A1_at AI664895 - - 9e-6 At4g36520 heat shock protein binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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