CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.674.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 Ptp.674.1.A1_at CK087369 hypothetical protein - 2e-11 At4g13780 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative S.X. H.G.
0.67 91.1 Ptp.3643.1.S1_at BU836758 hypothetical protein - 7e-3 At1g53620 unknown protein S.X. H.G.
0.60 86.0 Ptp.7259.1.A1_at DN487946 hypothetical protein - 1e-13 At1g07710 ankyrin repeat family protein S.X. H.G.
0.57 84.2 Ptp.1815.1.S1_at CV263204 hypothetical protein - 7e-139 At5g20000 26S proteasome AAA-ATPase subunit, putative S.X. H.G.
0.38 63.7 Ptp.100.2.S1_at CK088962 hypothetical protein - 1e+0 At3g56770 basic helix-loop-helix (bHLH) family protein S.X. H.G.
0.36 61.6 PtpAffx.106310.1.A1_s_at DN487587 hypothetical protein - 1e+0 At5g03210 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.0 98.0 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.8 98.0 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.4 97.0 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.4 97.0 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.3 96.9 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.1 96.8 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.8 96.4 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.8 96.4 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.7 96.3 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.5 96.1 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 4e-81 301 PtpAffx.127012.1.S1_at CV274969 hypothetical protein - 1e-20 At4g13780 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative C.G. S.X.
0.27 1e-68 260 Ptp.4726.1.S1_at BU835396 hypothetical protein - 1e-16 At4g13780 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative C.G. S.X.
0.03 3e-1 36 PtpAffx.211977.1.S1_at pmrna23523 hypothetical protein - 6e-3 At1g29000 heavy-metal-associated domain-containing protein C.G. S.X.
0.04 3e-1 36 PtpAffx.208954.1.S1_at pmrna17742 hypothetical protein - 1e+1 At5g27830 - C.G. S.X.
0.03 1e+0 34 PtpAffx.224462.1.S1_at pmrna43019 - - 2e+0 At4g27415 unknown protein C.G. S.X.
0.02 1e+0 34 PtpAffx.221572.1.S1_at pmrna38524 hypothetical protein - 0 At5g52520 OVA6 (OVULE ABORTION 6) C.G. S.X.
0.04 1e+0 34 PtpAffx.219237.1.S1_at pmrna35094 multidrug resistance protein ABC transporter family - 2e-12 At1g30410 ATMRP13 C.G. S.X.
0.01 1e+0 34 PtpAffx.212265.1.S1_at pmrna24046 hypothetical protein - 2e-9 At5g35930 AMP-dependent synthetase and ligase family protein C.G. S.X.
0.03 6e+0 32 PtpAffx.67685.1.A1_at DN487860 hypothetical protein - 1e-4 At5g20860 pectinesterase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-11 69 Arabidopsis thaliana At4g13780 827012 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative F:methionine-tRNA ligase activity, tRNA binding, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:response to cadmium ion, methionyl-tRNA aminoacylation;C:cytosol;OBMFAPV - - - C.G. S.X.
0.11 6e-6 52 Glycine max Gma.12051.1.S1_at BE821648 - - 5e-11 At4g13780 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative C.G. S.X.
0.03 8e+0 30 Hordeum vulgare HVSMEi0003D06r2_at HVSMEi0003D06r2 - - 4e+0 At5g53310 myosin heavy chain-related C.G. S.X.
0.02 8e+0 32 Oryza sativa OsAffx.26612.1.S1_at - - - 0 C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.50307.1.S1_at CA742895 - - 9e-1 At4g38790 ER lumen protein retaining receptor family protein C.G. S.X.
0.10 1e-12 71 Vitis vinifera 1610107_at CF209518 hypothetical protein LOC100257273 - 1e-7 At4g13780 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative C.G. S.X.
0.03 2e+0 32 Zea mays Zm.8927.1.S1_at BQ578253 - - 5e-3 At2g41905 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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