CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.6643.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 97.0 Ptp.6643.1.S1_at CV277634 hypothetical protein - 8e-6 At1g48590 C2 domain-containing protein S.X. H.G.
0.80 96.0 PtpAffx.201899.1.S1_at pmrna3786 hypothetical protein - 1e-12 At4g08550 electron carrier/ protein disulfide oxidoreductase S.X. H.G.
0.67 91.1 PtpAffx.10247.1.A1_at CV257648 hypothetical protein - 2e-6 At4g20780 calcium-binding protein, putative S.X. H.G.
0.53 80.5 PtpAffx.207361.1.S1_at pmrna14602 hypothetical protein - 2e-19 At1g75220 integral membrane protein, putative S.X. H.G.
0.44 71.9 PtpAffx.71444.1.A1_at CV256710 hypothetical protein - 3e-1 At5g63087 - S.X. H.G.
0.29 50.5 PtpAffx.108289.1.A1_s_at CV246215 hypothetical protein - 1e-16 At3g12620 protein phosphatase 2C family protein / PP2C family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.5 99.8 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
20.9 99.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
14.7 99.5 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
10.5 99.0 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
10.3 99.0 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
9.4 98.8 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
0.3 55.0 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.3 55.0 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.3 55.0 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.3 55.0 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 3e-98 359 PtpAffx.58792.1.A1_at CK090726 hypothetical protein - 2e+0 At3g53550 - C.G. S.X.
0.05 2e-4 48 Ptp.7663.1.S1_at CX169891 hypothetical protein - 3e-11 At3g17980 C2 domain-containing protein C.G. S.X.
0.02 4e-2 40 PtpAffx.206081.1.S1_at pmrna12047 hypothetical protein - 7e-1 At4g04402 two-component phosphorelay mediator, putative C.G. S.X.
0.06 2e-1 38 PtpAffx.30004.1.S1_at CV247109 hypothetical protein - 6e-7 At1g48590 C2 domain-containing protein C.G. S.X.
0.02 7e-1 36 PtpAffx.97872.1.A1_at CV269897 hypothetical protein - 3e-17 At4g26940 galactosyltransferase family protein C.G. S.X.
0.02 7e-1 36 PtpAffx.903.3.A1_a_at CF230657 hypothetical protein - 3e-14 At1g04290 thioesterase family protein C.G. S.X.
0.02 7e-1 36 PtpAffx.89229.1.S1_at CV232583 hypothetical protein - 1e+0 At1g17285 unknown protein C.G. S.X.
0.02 7e-1 36 PtpAffx.383.2.S1_at CV265253 hypothetical protein - 2e-15 At5g54500 FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1) C.G. S.X.
0.03 7e-1 36 PtpAffx.37401.1.A1_s_at CV253800 hypothetical protein - 7e-1 At3g15750 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 8e-6 52 Arabidopsis thaliana At1g48590 841280 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO - - - C.G. S.X.
0.07 4e-2 40 Glycine max Gma.15359.2.S1_a_at AW781747 - - 7e-2 At1g70790 C2 domain-containing protein C.G. S.X.
0.02 2e-1 36 Hordeum vulgare HT11C04u_x_at HT11C04u - - 4e+0 At1g56010 NAC1 C.G. S.X.
0.02 9e-1 36 Oryza sativa Os.18866.3.A1_at - - - 0 C.G. S.X.
0.03 5e-1 36 Triticum aestivum TaAffx.52082.1.S1_at CA713446 - - 7e+0 Atmg00910 - C.G. S.X.
0.15 2e-12 71 Vitis vinifera 1610384_s_at CB340178 hypothetical protein LOC100252560 - 3e-5 At1g23140 C2 domain-containing protein C.G. S.X.
0.03 2e-1 36 Zea mays ZmAffx.485.1.S1_at AI691349 - - 8e-1 Atmg00140 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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