Gene omics information

Query gene ID Ptp.6512.1.S1_s_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6791.1Ptp.6512.1.S1_s_atCK112728--2e-92Atcg00790-S.X.H.G.
0.5078.6PtpAffx.27285.1.A1_s_atCA923948hypothetical protein-9e-58At1g80670transducin family protein / WD-40 repeat family proteinS.X.H.G.
0.4067.0Ptp.7512.1.S1_s_atCK112401hypothetical protein-1e-43Atcg00820-S.X.H.G.
0.2543.6PtpAffx.30207.1.S1_s_atCV257448hypothetical protein-2e-61At3g11730ATFP8S.X.H.G.
0.2340.5PtpAffx.216450.1.S1_atpmrna31230hypothetical protein-2e-4Atcg00500-S.X.H.G.
0.1830.8PtpAffx.1980.3.A1_a_atCV246685hypothetical protein-3e-4At4g27380unknown proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
3.794.7GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.193.2GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.791.8GSM362884Clone1979_LPI2_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.691.3GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.691.3GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.691.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
2.490.4GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.490.4GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.289.3GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.188.6GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.238e-83307PtpAffx.198.1.S1_atCV242920hypothetical protein-3e-115Atcg00750-C.G.S.X.
0.059e-1891Ptp.7347.1.S1_s_atCV236704--2e-10Atcg00790-C.G.S.X.
0.038e-342Ptp.3820.1.S1_atDN496251EIN2 -like protein, nramp transporter-2e+0At5g22080DNAJ heat shock N-terminal domain-containing proteinC.G.S.X.
0.041e-138PtpAffx.200414.1.S1_atpmrna838--6e-1At3g16660unknown proteinC.G.S.X.
0.035e-136PtpAffx.8523.8.S1_atCV225763hypothetical protein-1e-3At1g55360unknown proteinC.G.S.X.
0.015e-136PtpAffx.224437.1.S1_atpmrna42960hypothetical protein-1e-3At5g51750ATSBT1.3 (ARABIDOPSIS THALIANA SUBTILASE 1.3)C.G.S.X.
0.035e-136PtpAffx.144658.1.S1_atCF229387hypothetical protein-4e-16At2g31400pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.032e+034PtpAffx.213644.1.S1_atpmrna26651hypothetical protein-4e-3At5g01300phosphatidylethanolamine-binding family proteinC.G.S.X.
0.022e+034PtpAffx.206651.1.S1_atpmrna13207hypothetical protein-7e-1At2g02350SKIP3 (SKP1 INTERACTING PARTNER 3)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.622e-92339Arabidopsis thalianaAtcg00790--chloroplast gene encoding a ribosomal protein L16, which is a constituent of 50S large ribosomal subunit---C.G.S.X.
0.393e-101369Glycine maxGma.10842.1.S1_s_atCA851794--5e-107Atcg00790-C.G.S.X.
0.413e-80297Hordeum vulgareContig11738_atContig11738--5e-63Atcg00780-C.G.S.X.
0.493e-74280Oryza sativaOsAffx.32337.1.A1_at---0C.G.S.X.
0.306e-43174Triticum aestivumTaAffx.128896.20.S1_atCA683652--6e-36Atcg00790-C.G.S.X.
0.151e-136484Vitis vinifera1622010_atCF207538similar to RNA polymerase alpha subunit-0Atcg00740-C.G.S.X.
0.493e-70264Zea maysZmAffx.1521.1.S1_at11990232-58--1e-70Atcg00790-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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