Gene omics information

Query gene ID	Ptp.6452.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	87.0	Ptp.6452.1.S1_s_at	CX657031	hypothetical protein	-	4e-43	At4g19110	protein kinase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.11326.1.A1_at	CK095796	hypothetical protein	-	1e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.65137.1.S1_at	DN493780	-	-	5e-3	At3g15920	phox (PX) domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.35286.1.S1_at	CN550224	hypothetical protein	-	3e-39	At4g39080	VHA-A3 (VACUOLAR PROTON ATPASE A3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.60149.1.S1_at	BU831925	hypothetical protein	-	7e-4	At3g56190	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	Ptp.3092.2.S1_s_at	DN493125	hypothetical protein	-	2e-20	At1g28240	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.54805.1.S1_at	CV225481	hypothetical protein	-	4e-38	At5g01960	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.222492.1.S1_s_at	pmrna39954	glycosyltransferase, family GT8	-	9e-53	At4g38270	GAUT3 (Galacturonosyltransferase 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	Ptp.231.1.A1_s_at	CK087602	hypothetical protein	-	1e-10	At2g20230	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	Ptp.6382.1.S1_at	CV244409	hypothetical protein	-	4e-8	At5g05930	guanylyl cyclase-related (GC1)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.9	96.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.2	93.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.4	90.4	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.95	0	2472	Ptp.6452.1.S1_at	CX657031	hypothetical protein	-	4e-43	At4g19110	protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	1e-9	65	PtpAffx.223761.1.S1_s_at	pmrna41923	hypothetical protein	-	2e-1	At4g19110	protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.15	1e-9	65	PtpAffx.213151.1.S1_at	pmrna25730	hypothetical protein	-	2e-6	At4g19110	protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	8e-8	59	PtpAffx.203582.1.S1_at	pmrna7114	hypothetical protein	-	2e-4	At4g19110	protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-2	42	Ptp.5337.1.S1_a_at	BU891909	hypothetical protein	-	4e-60	At3g22750	protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-2	42	Ptp.5337.1.S1_at	BU891909	hypothetical protein	-	4e-60	At3g22750	protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	7e-2	40	PtpAffx.203306.1.S1_at	pmrna6556	-	-	7e-9	At5g45430	protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-1	38	PtpAffx.155706.1.S1_at	CF230473	hypothetical protein	-	2e-61	At3g22750	protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-1	38	PtpAffx.138124.1.S1_at	BI120454	hypothetical protein	-	3e-54	At3g22750	protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	4e-43	176	Arabidopsis thaliana	At4g19110	827649	protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.26	3e-72	274	Glycine max	GmaAffx.88272.2.S1_at	BG156388	-	-	1e-19	At5g45430	protein kinase, putative	C.G.	S.X.	Please select
0.02	2e+0	34	Hordeum vulgare	HW06I17u_at	HW06I17u	-	-	4e-9	At2g46860	AtPPa3 (Arabidopsis thaliana pyrophosphorylase 3)	C.G.	S.X.	Please select
0.09	7e-6	54	Oryza sativa	Os06g0116100	CB683800	-	Serine/threonine-protein kinase MAK (EC 2.7.1.37)(Male germ cell- associated kinase)	9e-17	At5g45430	protein kinase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-4	48	Triticum aestivum	Ta.7252.2.S1_at	BQ619846	-	-	1e-10	At5g45430	protein kinase, putative	C.G.	S.X.	Please select
0.17	1e-36	153	Vitis vinifera	1620674_at	CF603413	-	-	2e-5	At5g45428	CPuORF24 (Conserved peptide upstream open reading frame 24)	C.G.	S.X.	Please select
0.07	2e-2	40	Zea mays	Zm.3664.1.S1_at	CF630053	hypothetical protein LOC100192489	-	1e-15	At5g45430	protein kinase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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