CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.6370.3.S1_a_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 Ptp.6370.3.S1_a_at CK091400 hypothetical protein - 6e+0 At3g23635 RTFL13 (ROTUNDIFOLIA LIKE 13) S.X. H.G.
0.50 78.6 PtpAffx.204155.1.S1_s_at pmrna8187 hypothetical protein - 2e+0 At5g07790 unknown protein S.X. H.G.
0.50 78.6 PtpAffx.56789.1.A1_at CV237314 hypothetical protein - 6e-16 At4g28760 unknown protein S.X. H.G.
0.46 73.7 PtpAffx.21811.1.S1_at CK106121 hypothetical protein - 1e+0 At5g36000 unknown protein S.X. H.G.
0.42 68.6 PtpAffx.71184.1.S1_s_at BU821746 hypothetical protein - 7e-23 At5g16300 - S.X. H.G.
0.40 67.0 PtpAffx.150588.1.S1_at BP927891 hypothetical protein - 5e-13 At1g79090 unknown protein S.X. H.G.
0.30 52.0 PtpAffx.155942.1.S1_at CF235846 hypothetical protein - 8e-19 At4g31490 coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative S.X. H.G.
0.29 50.5 Ptp.8135.2.S1_at DN503783 - - 2e-7 At3g15355 UBC25 (UBIQUITIN-CONJUGATING ENZYME 25) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.9 98.0 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.4 97.7 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.1 97.6 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.9 97.4 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.8 97.4 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.5 97.1 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.6 96.2 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 1e-38 161 PtpAffx.207722.1.S1_at pmrna15343 hypothetical protein - 8e-1 At1g30910 molybdenum cofactor sulfurase family protein C.G. S.X.
0.02 4e-2 40 PtpAffx.208987.1.S1_at pmrna17808 white-brown-complex ABC transporter family - 3e-19 At3g25620 ABC transporter family protein C.G. S.X.
0.03 6e-1 36 PtpAffx.67679.3.S1_a_at CV231106 acyl:coa ligase acetate-coa synthetase-like protein - 3e-1 At5g54460 wound-responsive protein-related C.G. S.X.
0.01 6e-1 36 PtpAffx.215488.1.S1_at pmrna29710 hypothetical protein - 3e-66 At4g04920 SFR6 (SENSITIVE TO FREEZING 6) C.G. S.X.
0.02 6e-1 36 PtpAffx.205809.1.S1_at pmrna11480 hypothetical protein - 1e-8 At5g66330 leucine-rich repeat family protein C.G. S.X.
0.02 6e-1 36 PtpAffx.205193.1.S1_at pmrna10285 hypothetical protein - 3e+0 At3g19000 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.02 6e-1 36 PtpAffx.12680.1.S1_at CV232323 hypothetical protein - 2e+0 At1g75930 EXL6 C.G. S.X.
0.03 2e+0 34 PtpAffx.81993.1.A1_at CV264929 - - 9e-1 At5g17770 ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) C.G. S.X.
0.02 2e+0 34 PtpAffx.5746.2.S1_x_at CV237077 - - 7e-3 At5g15600 SP1L4 (SPIRAL1-LIKE4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e+0 32 Arabidopsis thaliana At3g23635 5008024 RTFL13 (ROTUNDIFOLIA LIKE 13) F:unknown;P:unknown;C:mitochondrion - - - C.G. S.X.
0.04 4e-5 50 Glycine max Gma.422.1.A1_at BQ080589 - - 6e+0 At5g38110 ASF1B (ANTI- SILENCING FUNCTION 1B) C.G. S.X.
0.03 2e-1 36 Hordeum vulgare HU08O22r_at HU08O22r - - 7e-5 At1g31910 GHMP kinase family protein C.G. S.X.
0.01 3e+0 34 Oryza sativa OsAffx.14434.1.S1_at - - - 0 C.G. S.X.
0.03 4e-1 36 Triticum aestivum Ta.9130.3.A1_at CA685307 - - 3e-7 At1g31910 GHMP kinase family protein C.G. S.X.
0.03 7e+0 30 Vitis vinifera 1621236_at CF512980 hypothetical protein LOC100267550 - 8e-35 At4g26760 MAP65-2 C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.789.1.A1_at AI759114 - - 3e+0 At4g05010 F-box family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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