CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.6316.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 96.0 Ptp.6316.1.A1_at CV282366 hypothetical protein - 4e-5 At5g27830 - S.X. H.G.
0.55 82.2 PtpAffx.249.280.S1_a_at CK094419 hypothetical protein - 5e-9 At1g55510 BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT) S.X. H.G.
0.46 73.7 PtpAffx.63326.1.A1_at CV244522 hypothetical protein - 5e-16 At2g35100 ARAD1 (ARABINAN DEFICIENT 1) S.X. H.G.
0.40 67.0 PtpAffx.27728.1.S1_at BU895296 - - 5e-35 At3g14270 phosphatidylinositol-4-phosphate 5-kinase family protein S.X. H.G.
0.28 50.5 PtpAffx.39331.1.S1_at BU831384 hypothetical protein - 4e-21 At5g46150 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein S.X. H.G.
0.14 23.5 Ptp.2532.1.S1_x_at CV277382 hypothetical protein - 3e-52 At1g01820 PEX11C (PEROXIN 11C) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.2 95.6 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6 91.3 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 6e-76 286 PtpAffx.86620.2.S1_at CV241189 - - 1e+0 At2g40410 Ca(2+)-dependent nuclease, putative C.G. S.X.
0.19 2e-63 244 PtpAffx.31089.1.A1_at CV248414 hypothetical protein - 2e-1 At5g22140 pyridine nucleotide-disulphide oxidoreductase family protein C.G. S.X.
0.13 2e-23 111 PtpAffx.86620.1.S1_at DN497045 - - 9e-1 At4g25720 QC (GLUTAMINYL CYCLASE) C.G. S.X.
0.02 2e-1 38 PtpAffx.21.1.A1_at DN492083 - - 3e-1 At5g19875 unknown protein C.G. S.X.
0.01 9e-1 36 PtpAffx.213880.1.S1_s_at pmrna27069 hypothetical protein - 4e-36 At3g01490 protein kinase, putative C.G. S.X.
0.01 9e-1 36 PtpAffx.213880.1.S1_at pmrna27069 hypothetical protein - 4e-36 At3g01490 protein kinase, putative C.G. S.X.
0.02 9e-1 36 PtpAffx.133398.1.A1_at CV278665 hypothetical protein - 8e-27 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
0.01 9e-1 36 Ptp.7433.1.S1_at CV267931 - - 1e-48 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
0.01 9e-1 36 Ptp.7433.1.S1_s_at CV267931 hypothetical protein - 1e-48 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 4e-5 50 Arabidopsis thaliana At5g27830 832845 - F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;MOP - - - C.G. S.X.
0.20 4e-12 73 Glycine max GmaAffx.90244.1.S1_at CF805969 - - 1e+0 At4g02200 drought-responsive family protein C.G. S.X.
0.02 5e+0 32 Hordeum vulgare HV_CEb0015D22r2_at HV_CEb0015D22r2 - - 3e-1 At3g53570 AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) C.G. S.X.
0.02 2e-2 42 Oryza sativa Os02g0592500 AK070526.1 - Conserved hypothetical protein 6e-1 At5g39450 F-box family protein C.G. S.X.
0.02 3e+0 34 Triticum aestivum Ta.2830.2.S1_a_at CA611439 - - 7e-5 At1g17370 UBP1B (oligouridylate binding protein 1B) C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1617523_at CF209489 hypothetical protein LOC100245822 - 4e+0 At4g13690 unknown protein C.G. S.X.
0.03 3e-1 36 Zea mays Zm.3999.1.S1_at CF024332 hypothetical protein LOC100276811 - 3e+0 At5g39860 PRE1 (PACLOBUTRAZOL RESISTANCE1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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