CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.6308.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 86.0 Ptp.6308.1.S1_at CV229172 hypothetical protein - 1e-10 At3g15340 PPI2 (proton pump interactor 2) S.X. H.G.
0.59 84.9 Ptp.148.1.S1_at CV225595 hypothetical protein - 4e-35 At3g55380 UBC14 (ubiquitin-conjugating enzyme 14) S.X. H.G.
0.46 73.7 Ptp.5510.1.S1_at CV243206 hypothetical protein - 5e-41 At4g12650 - S.X. H.G.
0.36 61.6 PtpAffx.200667.1.S1_x_at pmrna1297 hypothetical protein - 4e-78 At3g15730 PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1) S.X. H.G.
0.35 59.7 Ptp.8055.1.S1_at CV231079 hypothetical protein - 4e-12 At2g24050 MIF4G domain-containing protein / MA3 domain-containing protein S.X. H.G.
0.32 55.2 PtpAffx.252.1.A1_at CV254804 Sec61 transport protein - 4e-17 At1g78720 protein transport protein sec61, putative S.X. H.G.
0.31 53.7 Ptp.2158.1.S1_at CV227156 hypothetical protein - 7e-3 At4g29350 PFN2 (PROFILIN 2) S.X. H.G.
0.29 50.5 Ptp.1369.1.A1_at CV228220 hypothetical protein - 2e-11 At2g02960 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.19 32.7 Ptp.7136.1.A1_s_at DN486671 hypothetical protein - 4e-8 At3g16760 tetratricopeptide repeat (TPR)-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.5 98.3 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.2 96.8 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.9 96.5 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.7 96.3 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.81 0 1092 PtpAffx.134412.1.A1_at CV236287 hypothetical protein - 4e-7 At5g36690 - C.G. S.X.
0.28 1e-76 287 PtpAffx.148421.1.S1_at CK102614 - - 9e-15 At4g27500 PPI1 (PROTON PUMP INTERACTOR 1) C.G. S.X.
0.04 4e-5 50 PtpAffx.225334.1.S1_at pmrna44616 hypothetical protein - 2e+0 At5g67580 TRB2 C.G. S.X.
0.03 2e-1 38 PtpAffx.221385.1.S1_at pmrna38256 hypothetical protein - 3e-7 At4g21200 GA2OX8 (GIBBERELLIN 2-OXIDASE 8) C.G. S.X.
0.02 2e-1 38 PtpAffx.21425.1.A1_at BU874741 hypothetical protein - 2e+0 At1g16730 unknown protein C.G. S.X.
0.01 2e-1 38 PtpAffx.201102.1.S1_at pmrna2174 hypothetical protein - 8e-1 At1g67350 unknown protein C.G. S.X.
0.03 2e-1 38 Ptp.1862.1.A1_at CK093714 - - 1e+0 At4g15545 unknown protein C.G. S.X.
0.03 7e-1 36 PtpAffx.81667.1.A1_at CV282737 hypothetical protein - 5e+0 At1g68500 unknown protein C.G. S.X.
0.02 7e-1 36 PtpAffx.5577.1.A1_at CV243432 - - 1e-1 At3g22110 PAC1 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-10 67 Arabidopsis thaliana At3g15340 820765 PPI2 (proton pump interactor 2) Hypothetical protein similar to PPI1, a protein that interacts with the plasma membrane H+ ATPase AHA1 - - - C.G. S.X.
0.14 1e-23 111 Glycine max Gma.18090.1.S1_at BI969034 - - 2e-9 At3g15340 PPI2 (proton pump interactor 2) C.G. S.X.
0.03 2e-1 36 Hordeum vulgare S0000800046E03F1_x_at S0000800046E03F1 - - 4e-2 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.05 2e-4 48 Oryza sativa Os08g0390000 AB117988.1 - - 3e-7 At4g27500 PPI1 (PROTON PUMP INTERACTOR 1) C.G. S.X.
0.04 1e-1 38 Triticum aestivum Ta.16000.1.S1_at CA593673 - - 7e-1 At1g23290 RPL27AB C.G. S.X.
0.13 2e-19 95 Vitis vinifera 1617486_at CF210846 hypothetical protein LOC100267528 - 3e-9 At3g15340 PPI2 (proton pump interactor 2) C.G. S.X.
0.02 3e+0 32 Zea mays ZmAffx.1144.1.A1_at AW400064 Hypothetical protein LOC100193235 - 8e-1 At4g31470 pathogenesis-related protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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