CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.630.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 78.6 Ptp.630.1.S1_at CV260352 hypothetical protein - 3e-39 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) S.X. H.G.
0.80 96.0 Ptp.2052.1.S1_s_at CV264089 hypothetical protein - 7e-13 At1g51200 zinc finger (AN1-like) family protein S.X. H.G.
0.67 91.1 PtpAffx.36849.1.S1_at BU872031 hypothetical protein - 8e-22 At3g13060 - S.X. H.G.
0.46 73.7 PtpAffx.63920.1.S1_at CX182780 hypothetical protein - 1e+0 At1g68905 - S.X. H.G.
0.44 71.9 PtpAffx.39678.1.S1_at CX172487 hypothetical protein - 3e-76 At1g56330 ATSAR1B (SECRETION-ASSOCIATED RAS 1 B) S.X. H.G.
0.40 67.0 Ptp.2052.1.S1_at CV264089 hypothetical protein - 7e-13 At1g51200 zinc finger (AN1-like) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.7 97.9 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.0 97.5 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.5 97.1 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.75 0 831 PtpAffx.18887.1.S1_at CV260915 hypothetical protein - 6e-31 At3g55380 UBC14 (ubiquitin-conjugating enzyme 14) C.G. S.X.
0.50 6e-152 537 Ptp.1266.1.S1_a_at CV252807 hypothetical protein - 2e-31 At3g55380 UBC14 (ubiquitin-conjugating enzyme 14) C.G. S.X.
0.49 3e-132 472 Ptp.148.1.S1_at CV225595 hypothetical protein - 4e-35 At3g55380 UBC14 (ubiquitin-conjugating enzyme 14) C.G. S.X.
0.39 1e-66 254 PtpAffx.87608.1.S1_at CK115501 hypothetical protein - 4e-8 At5g59300 UBC7 (UBIQUITIN CARRIER PROTEIN 7) C.G. S.X.
0.14 2e-53 210 Ptp.2613.1.A1_x_at CV259129 hypothetical protein - 2e-33 At4g26230 60S ribosomal protein L31 (RPL31B) C.G. S.X.
0.01 2e-1 38 PtpAffx.214381.1.S1_at pmrna27986 hypothetical protein - 4e-6 At1g59720 CRR28 (CHLORORESPIRATORY REDUCTION28) C.G. S.X.
0.03 6e-1 36 PtpAffx.221261.1.S1_s_at pmrna38019 hypothetical protein - 4e-7 At1g60530 dynamin family protein C.G. S.X.
0.02 6e-1 36 PtpAffx.216397.1.S1_at pmrna31155 hypothetical protein - 3e-4 At1g60530 dynamin family protein C.G. S.X.
0.02 6e-1 36 PtpAffx.216397.1.S1_s_at pmrna31155 hypothetical protein - 3e-4 At1g60530 dynamin family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 3e-39 163 Arabidopsis thaliana At3g46460 823796 UBC13 (ubiquitin-conjugating enzyme 13) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV - - - C.G. S.X.
0.30 3e-58 226 Glycine max Gma.3757.1.S1_at CD405183 - - 6e-53 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) C.G. S.X.
0.17 4e-18 91 Hordeum vulgare Contig3462_at Contig3462 - - 5e-35 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) C.G. S.X.
0.29 6e-48 192 Oryza sativa Os01g0839700 AK104148.1 - Ubiquitin carrier protein 1e-39 At5g59300 UBC7 (UBIQUITIN CARRIER PROTEIN 7) C.G. S.X.
0.23 2e-18 93 Triticum aestivum Ta.26942.1.S1_at CD491274 - - 8e-46 At5g59300 UBC7 (UBIQUITIN CARRIER PROTEIN 7) C.G. S.X.
0.32 1e-63 242 Vitis vinifera 1608461_at BQ797145 hypothetical protein LOC100264959 - 6e-64 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) C.G. S.X.
0.22 1e-20 99 Zea mays Zm.6484.1.S1_a_at AY103605.1 ubiquitin-conjugating enzyme E2 7 /// Ubiquitin carrier protein - 1e-32 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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