CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.6244.1.S1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 83.9 Ptp.6244.1.S1_at DN487419 - - 4e-5 At4g04020 FIB (FIBRILLIN) S.X. H.G.
0.44 71.9 Ptp.5108.1.S1_s_at CV251903 hypothetical protein - 4e-13 At5g54940 eukaryotic translation initiation factor SUI1, putative S.X. H.G.
0.40 67.0 Ptp.2673.1.S1_x_at DN484952 - - 8e-18 At1g10500 ATCPISCA (chloroplast-localized IscA-like protein) S.X. H.G.
0.27 47.1 PtpAffx.54163.1.S1_at CV281432 hypothetical protein - 4e-8 At2g39000 GCN5-related N-acetyltransferase (GNAT) family protein S.X. H.G.
0.11 18.1 PtpAffx.29059.1.A1_at CV243861 hypothetical protein - 9e-2 At1g18486 unknown protein S.X. H.G.
0.10 16.3 PtpAffx.81485.1.S1_at CV240814 hypothetical protein - 3e-1 At4g16442 integral membrane family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.9 98.0 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.3 96.9 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.2 96.8 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.4 95.9 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.9 95.1 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7 91.8 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM244435 Mlp infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5 90.9 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.54 0 1078 PtpAffx.157830.1.S1_at DN497023 hypothetical protein - 5e-1 At4g04020 FIB (FIBRILLIN) C.G. S.X.
0.54 0 1078 PtpAffx.157830.1.S1_s_at DN497023 hypothetical protein - 5e-1 At4g04020 FIB (FIBRILLIN) C.G. S.X.
0.40 5e-107 389 PtpAffx.100058.1.A1_at BP932805 - - 9e-1 At5g50410 unknown protein C.G. S.X.
0.22 2e-45 184 PtpAffx.209662.1.S1_at pmrna19066 hypothetical protein - 1e-1 At4g22240 plastid-lipid associated protein PAP, putative C.G. S.X.
0.03 1e-2 42 PtpAffx.69041.1.A1_at CV272828 - - 4e-3 At4g33565 protein binding / zinc ion binding C.G. S.X.
0.02 5e-2 40 PtpAffx.24341.1.A1_at CV263104 - - 2e+0 At4g21216 unknown protein C.G. S.X.
0.02 2e-1 38 PtpAffx.3289.3.S1_at CF230543 hypothetical protein - 5e-69 At3g62870 60S ribosomal protein L7A (RPL7aB) C.G. S.X.
0.02 2e-1 38 Ptp.6148.1.S1_at BU810548 - - 8e-16 At5g16530 PIN5 (PIN-FORMED 5) C.G. S.X.
0.02 8e-1 36 PtpAffx.249.148.A1_a_at CV230214 hypothetical protein - 1e-15 At2g44360 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 4e-5 50 Arabidopsis thaliana At4g04020 825714 FIB (FIBRILLIN) Fibrillin precursor protein. The fibrillin preprotein, but not the mature protein interacts with ABI2. Regulated by abscisic acid response regulators. Involved in abscisic acid-mediated photoprotection. - - - C.G. S.X.
0.28 2e-50 200 Glycine max Gma.4315.1.S1_at BM886786 - - 3e-15 At4g22240 plastid-lipid associated protein PAP, putative C.G. S.X.
0.05 5e-6 52 Hordeum vulgare Contig12091_at Contig12091 - - 8e-3 At4g04020 FIB (FIBRILLIN) C.G. S.X.
0.06 6e-15 83 Oryza sativa Os09g0133600 AK104742.1 - Fibrillin-like protein 1e-4 At4g04020 FIB (FIBRILLIN) C.G. S.X.
0.05 3e-9 63 Triticum aestivum Ta.22817.4.S1_at BG905908 - - 7e+0 At4g04020 FIB (FIBRILLIN) C.G. S.X.
0.12 2e-25 115 Vitis vinifera 1622129_s_at CF201787.1 hypothetical protein LOC100257871 - 8e-1 At4g34760 auxin-responsive family protein C.G. S.X.
0.10 1e-9 63 Zea mays Zm.9407.1.A1_at BM268507 plastid-lipid-associated protein 2 - 3e-2 At4g04020 FIB (FIBRILLIN) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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