Gene omics information

Query gene ID	Ptp.6191.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	93.6	Ptp.6191.1.S1_at	CV235273	hypothetical protein	-	1e-30	At3g10300	calcium-binding EF hand family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.82	96.3	PtpAffx.73006.1.S1_s_at	CV255422	hypothetical protein	-	1e-25	At1g56070	LOS1	S.X.	H.G.	Please selecteFP Browser (expression)
0.64	88.4	PtpAffx.217218.1.S1_at	pmrna32394	hypothetical protein	-	9e-10	At1g58110	bZIP family transcription factor	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.2753.1.S1_at	CV248422	hypothetical protein	-	4e-32	At1g61700	DNA-directed RNA polymerase II, putative (RPB10)	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.211553.1.S1_x_at	pmrna22641	hypothetical protein	-	1e-5	At2g46040	ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	Ptp.2885.2.A1_at	CV241140	hypothetical protein	-	4e+0	At5g46770	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.121254.1.A1_at	CV249707	hypothetical protein	-	6e-21	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.7308.3.S1_at	CK091366	hypothetical protein	-	6e-37	At4g39520	GTP-binding protein, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.17025.3.A1_at	CV268384	hypothetical protein	-	3e+0	At4g39330	CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9)	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.209777.1.S1_at	pmrna19286	hypothetical protein	-	2e-20	At1g17210	zinc ion binding	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.9	98.7	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
7.8	98.4	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
7.8	98.4	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
7.7	98.3	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	0	2242	Ptp.6191.1.S1_s_at	CV235273	hypothetical protein	-	1e-30	At3g10300	calcium-binding EF hand family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.61	0	1051	PtpAffx.29384.3.S1_s_at	CN550283	hypothetical protein	-	6e-9	At3g10300	calcium-binding EF hand family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.50	0	920	PtpAffx.29384.2.A1_at	CA825858	hypothetical protein	-	4e-20	At5g04170	calcium-binding EF hand family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.60	0	728	PtpAffx.29384.1.S1_at	CV253499	hypothetical protein	-	1e-23	At5g04170	calcium-binding EF hand family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.13455.1.S1_at	CK096324	hypothetical protein	-	2e-6	At2g27480	calcium ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-1	36	PtpAffx.155357.1.S1_at	CF231215	hypothetical protein	-	2e-4	At5g17070	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e+0	34	PtpAffx.5433.1.A1_at	CV248746	hypothetical protein	-	9e-39	At2g40840	DPE2 (DISPROPORTIONATING ENZYME 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e+0	34	PtpAffx.222520.1.S1_x_at	pmrna40017	hypothetical protein	-	3e-6	At2g28250	NCRK	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e+0	34	PtpAffx.222520.1.S1_s_at	pmrna40017	hypothetical protein	-	3e-6	At2g28250	NCRK	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	1e-30	135	Arabidopsis thaliana	At3g10300	820192	calcium-binding EF hand family protein	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	8e-29	129	Glycine max	Gma.1518.1.S1_at	BI945317	-	-	9e-37	At3g10300	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.08	3e-4	46	Hordeum vulgare	Contig11114_at	Contig11114	-	-	7e-15	At3g10300	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.11	2e-12	75	Oryza sativa	Os.10842.2.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	7e-4	46	Triticum aestivum	Ta.6564.3.S1_a_at	CA645400	-	-	2e-11	At5g04170	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.25	3e-31	135	Vitis vinifera	1613417_at	CF415631	similar to calcium-binding EF hand family protein	-	2e-28	At3g10300	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.02	4e+0	32	Zea mays	Zm.15029.1.A1_at	CF649610	hypothetical protein LOC100274857	-	4e+0	At5g24400	emb2024 (embryo defective 2024)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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