Gene omics information

Query gene ID	Ptp.6163.2.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	78.6	Ptp.6163.2.S1_s_at	CF234204	hypothetical protein	-	9e-24	At3g53710	AGD6	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.2152.2.S1_a_at	CA826185	hypothetical protein	-	2e-5	At3g13410	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.138176.1.S1_s_at	BU883966	hypothetical protein	-	7e-5	At2g17720	oxidoreductase, 2OG-Fe(II) oxygenase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.5670.1.S1_s_at	CN523903	hypothetical protein	-	6e-16	At3g50000	CKA2 (CASEIN KINASE II, ALPHA CHAIN 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.1287.2.S1_s_at	CX178052	hypothetical protein	-	2e-73	At5g45130	RHA1 (RAB HOMOLOG 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.135416.1.S1_s_at	CN517682	hypothetical protein	-	6e-2	At5g50650	WD-40 repeat family protein / St12p protein, putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.9	95.1	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.3	89.8	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	5e-91	335	PtpAffx.49826.1.A1_at	CV269591	hypothetical protein	-	2e+0	At5g04850	VPS60.2	C.G.	S.X.	Please selecteFP Browser (expression)
0.43	3e-89	329	Ptp.6163.1.S1_s_at	CV232070	hypothetical protein	-	2e-15	At3g53710	AGD6	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	1e-35	151	PtpAffx.89051.1.A1_at	CV240865	hypothetical protein	-	1e-10	At3g53710	AGD6	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.92099.1.A1_at	DN488932	AP2/ERF domain-containing transcription factor	-	2e-7	At5g05410	DREB2A	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.92099.1.A1_s_at	DN488932	AP2/ERF domain-containing transcription factor	-	2e-7	At5g05410	DREB2A	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.89020.1.A1_at	CV241808	hypothetical protein	-	4e-10	At2g25690	senescence-associated protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.209249.1.S1_at	pmrna18285	AP2/ERF domain-containing transcription factor	-	6e-13	At5g05410	DREB2A	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.207786.1.S1_at	pmrna15478	AP2/ERF domain-containing transcription factor	-	2e-8	At3g11020	DREB2B (DRE/CRT-BINDING PROTEIN 2B)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.4228.1.S1_at	CV226456	hypothetical protein	-	2e-48	At5g13710	SMT1 (STEROL METHYLTRANSFERASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	9e-24	111	Arabidopsis thaliana	At3g53710	824538	AGD6	A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	8e-19	95	Glycine max	GmaAffx.7014.1.S1_at	BI469035	-	-	7e-12	At2g37550	AGD7	C.G.	S.X.	Please select
0.16	6e-5	48	Hordeum vulgare	Contig4779_s_at	Contig4779	-	-	2e-8	At3g53710	AGD6	C.G.	S.X.	Please select
0.11	6e-11	69	Oryza sativa	Os03g0278400	AK070052.1	-	ADP ribosylation GTPase-like protein (Fragment)	3e-7	At2g37550	AGD7	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	1e-4	48	Triticum aestivum	Ta.2718.2.S1_a_at	CK168482	-	-	9e-9	At3g53710	AGD6	C.G.	S.X.	Please select
0.03	8e+0	30	Vitis vinifera	1620940_at	CF201899.1	-	-	2e+1	At5g66990	RWP-RK domain-containing protein	C.G.	S.X.	Please select
0.05	2e-1	36	Zea mays	Zm.13620.1.A1_at	CK369896	-	-	8e-6	At2g37550	AGD7	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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