CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.6151.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 97.0 Ptp.6151.1.A1_at DN487970 hypothetical protein - 2e-6 At5g23040 CDF1 (CELL GROWTH DEFECT FACTOR 1) S.X. H.G.
0.67 91.1 PtpAffx.45383.2.A1_a_at CV255277 hypothetical protein - 1e-9 At4g22000 unknown protein S.X. H.G.
0.55 82.2 PtpAffx.1997.1.A1_x_at CV236998 hypothetical protein - 4e-34 At5g48870 SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) S.X. H.G.
0.46 73.7 PtpAffx.32368.1.S1_at CV278073 hypothetical protein - 7e-40 At2g33430 DAL1 (DIFFERENTIATION AND GREENING-LIKE 1) S.X. H.G.
0.40 67.0 PtpAffx.152488.1.S1_s_at CN520535 hypothetical protein - 3e-11 At5g23040 CDF1 (CELL GROWTH DEFECT FACTOR 1) S.X. H.G.
0.25 43.6 PtpAffx.46613.1.S1_s_at CV233642 hypothetical protein - 7e-12 At4g27390 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.6 99.7 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.9 95.1 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9 92.5 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1370 Ptp.6151.1.A1_a_at DN487970 hypothetical protein - 2e-6 At5g23040 CDF1 (CELL GROWTH DEFECT FACTOR 1) C.G. S.X.
0.06 9e-15 81 PtpAffx.152488.1.S1_s_at CN520535 hypothetical protein - 3e-11 At5g23040 CDF1 (CELL GROWTH DEFECT FACTOR 1) C.G. S.X.
0.10 1e-10 67 PtpAffx.218041.1.S1_at pmrna33553 - - 1e-6 At5g23040 CDF1 (CELL GROWTH DEFECT FACTOR 1) C.G. S.X.
0.03 5e-1 36 PtpAffx.123118.1.A1_at CK091422 - - 1e+0 At5g18362 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.97555.1.S1_at CV269672 hypothetical protein - 7e-28 At4g27490 3' exoribonuclease family domain 1-containing protein C.G. S.X.
0.02 2e+0 34 PtpAffx.97555.1.S1_s_at CV269672 hypothetical protein - 7e-28 At4g27490 3' exoribonuclease family domain 1-containing protein C.G. S.X.
0.02 2e+0 34 PtpAffx.37311.1.A1_at CV256718 hypothetical protein - 3e-11 At5g44380 FAD-binding domain-containing protein C.G. S.X.
0.01 2e+0 34 PtpAffx.207932.1.S1_at pmrna15741 hypothetical protein - 7e-94 At3g06550 - C.G. S.X.
0.00 2e+0 34 PtpAffx.206457.1.S1_at pmrna12809 f-box family protein - 5e-4 At1g55310 SR33 C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 2e-6 54 Arabidopsis thaliana At5g23040 832368 CDF1 (CELL GROWTH DEFECT FACTOR 1) Cell growth defect factor 1.Causes Bax mediated lethality in yeast by generating reactive oxygen species and this effect is suppressed by AtBI-1. - - - C.G. S.X.
0.11 5e-10 65 Glycine max GmaAffx.93425.1.S1_at CF809150 - - 1e-6 At5g23040 CDF1 (CELL GROWTH DEFECT FACTOR 1) C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HVSMEk0018E17r2_at HVSMEk0018E17r2 - - 7e-1 At4g13965 - C.G. S.X.
0.04 2e-1 38 Oryza sativa Os09g0380200 AK058363.1 - Conserved hypothetical protein 2e-2 At5g61180 unknown protein C.G. S.X.
0.03 6e+0 32 Triticum aestivum TaAffx.95250.1.A1_at BE515585 - - 1e+0 At2g30032 unknown protein C.G. S.X.
0.11 5e-25 113 Vitis vinifera 1619091_at CF517410 hypothetical protein LOC100262799 - 7e-19 At5g23040 CDF1 (CELL GROWTH DEFECT FACTOR 1) C.G. S.X.
0.03 1e-1 36 Zea mays Zm.10812.2.A1_a_at CA402806 - - 4e-4 At2g28450 zinc finger (CCCH-type) family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage