CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.6077.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 Ptp.6077.1.S1_s_at BI122891 hypothetical protein - 1e+0 At4g21920 unknown protein S.X. H.G.
0.67 91.1 Ptp.6340.1.S1_at BU888207 hypothetical protein - 2e-2 At5g59000 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.63 88.1 Ptp.7181.1.S1_at DN488307 hypothetical protein - 2e-6 At1g49570 peroxidase, putative S.X. H.G.
0.59 84.9 PtpAffx.204632.1.S1_at pmrna9105 hypothetical protein - 1e-1 At5g50200 WR3 (WOUND-RESPONSIVE 3) S.X. H.G.
0.53 80.5 PtpAffx.9749.1.A1_at DN491489 hypothetical protein - 4e+0 At5g04790 unknown protein S.X. H.G.
0.40 67.0 PtpAffx.152294.1.S1_at CX653673 - - 5e-1 At3g59440 calcium-binding protein, putative S.X. H.G.
0.40 67.0 Ptp.3032.1.S1_s_at DN494443 hypothetical protein - 6e-3 At5g07850 transferase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.2 99.5 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
10.9 99.1 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
9.3 98.8 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.8 98.0 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.6 97.9 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.8 97.4 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.6 97.2 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.8 96.4 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.7 96.3 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1235 Ptp.6077.1.S1_at BI122891 hypothetical protein - 1e+0 At4g21920 unknown protein C.G. S.X.
0.01 1e-1 38 PtpAffx.206016.1.S1_at pmrna11924 hypothetical protein - 1e-9 At3g56860 UBP1 interacting protein 2a (UBA2a) C.G. S.X.
0.03 4e-1 36 PtpAffx.213619.1.S1_at pmrna26596 hypothetical protein - 4e-1 At2g40060 protein binding / structural molecule C.G. S.X.
0.02 4e-1 36 PtpAffx.213738.1.S1_at pmrna26814 hypothetical protein - 1e-2 At2g38580 unknown protein C.G. S.X.
0.03 4e-1 36 PtpAffx.213619.1.S1_s_at pmrna26596 hypothetical protein - 4e-1 At2g40060 protein binding / structural molecule C.G. S.X.
0.02 4e-1 36 PtpAffx.209337.1.S1_at pmrna18471 hypothetical protein - 2e-3 At3g55420 unknown protein C.G. S.X.
0.02 4e-1 36 PtpAffx.203886.1.S1_at pmrna7674 hypothetical protein - 3e-5 At1g28250 unknown protein C.G. S.X.
0.02 4e-1 36 PtpAffx.1589.1.S1_a_at CV253773 hypothetical protein - 2e-3 At3g51890 protein binding / structural molecule C.G. S.X.
0.02 4e-1 36 PtpAffx.1589.1.S1_at CV253773 hypothetical protein - 2e-3 At3g51890 protein binding / structural molecule C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At4g21920 828281 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P - - - C.G. S.X.
0.04 4e-1 36 Glycine max PsAffx.C239000019_at PsAffx.C239000019 - - 4e+0 At1g42080 unknown protein C.G. S.X.
0.04 9e+0 30 Hordeum vulgare HU08K12u_x_at HU08K12u - - 9e-1 At5g63225 - C.G. S.X.
0.03 6e-1 36 Oryza sativa OsAffx.26528.1.S1_at - - - 0 C.G. S.X.
0.03 8e-2 38 Triticum aestivum Ta.28185.3.S1_x_at CD902302 - - 3e-1 At3g24770 CLE41 (CLAVATA3/ESR-RELATED 41) C.G. S.X.
0.04 6e-3 40 Vitis vinifera 1613851_at CD800992 hypothetical protein LOC100244739 - 2e+0 At4g08039 - C.G. S.X.
0.03 8e+0 30 Zea mays Zm.9216.1.A1_at BM267379 hypothetical protein LOC100276794 - 9e-2 At5g44380 FAD-binding domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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