CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.607.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 94.9 Ptp.607.1.S1_at CK087237 hypothetical protein - 1e-17 At5g54680 ILR3 (iaa-leucine resistant3) S.X. H.G.
0.44 71.9 Ptp.1730.1.A1_at CK093317 - - 5e+0 At5g62330 - S.X. H.G.
0.43 69.7 PtpAffx.41755.1.S1_at DN499227 hypothetical protein - 3e-2 At5g48030 GFA2 (GAMETOPHYTIC FACTOR 2) S.X. H.G.
0.29 50.5 PtpAffx.16390.1.S1_at DN496341 - - 6e+0 At1g29620 unknown protein S.X. H.G.
0.25 43.6 Ptp.788.1.S1_at CK089255 hypothetical protein - 2e-38 At4g38240 CGL1 (COMPLEX GLYCAN LESS 1) S.X. H.G.
0.24 41.8 Ptp.1919.1.A1_at CK092679 - - 4e-2 At5g40180 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.3 98.5 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.8 98.0 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.7 97.3 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.72 0 1051 PtpAffx.36508.1.S1_at CV280135 hypothetical protein - 6e-4 At5g54680 ILR3 (iaa-leucine resistant3) C.G. S.X.
0.54 6e-113 408 Ptp.607.2.S1_a_at BU888225 hypothetical protein - 2e-14 At1g51070 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.21 2e-29 131 PtpAffx.17445.1.S1_a_at CK090987 hypothetical protein - 7e-75 At5g54680 ILR3 (iaa-leucine resistant3) C.G. S.X.
0.21 2e-29 131 PtpAffx.17445.1.S1_at CK090987 hypothetical protein - 7e-75 At5g54680 ILR3 (iaa-leucine resistant3) C.G. S.X.
0.20 5e-21 103 PtpAffx.17445.2.S1_at CA822001 hypothetical protein - 9e-59 At5g54680 ILR3 (iaa-leucine resistant3) C.G. S.X.
0.02 1e+0 36 PtpAffx.122937.1.A1_s_at DN490378 hypothetical protein - 7e-5 At3g25520 ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5) C.G. S.X.
0.01 1e+0 36 Ptp.2375.1.A1_at CV249610 hypothetical protein - 7e-35 At3g25520 ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5) C.G. S.X.
0.02 4e+0 34 PtpAffx.9143.3.A1_a_at CV245283 hypothetical protein - 4e+0 At5g04267 unknown protein C.G. S.X.
0.01 4e+0 34 PtpAffx.6660.1.S1_at CX170236 - - 2e-4 At4g32480 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 1e-17 91 Arabidopsis thaliana At5g54680 835557 ILR3 (iaa-leucine resistant3) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFBA - - - C.G. S.X.
0.23 2e-17 91 Glycine max Gma.2655.2.S1_a_at CD406833 - - 4e-51 At5g54680 ILR3 (iaa-leucine resistant3) C.G. S.X.
0.10 1e-3 44 Hordeum vulgare Contig8386_at Contig8386 - - 1e-4 At5g54680 ILR3 (iaa-leucine resistant3) C.G. S.X.
0.05 4e-4 48 Oryza sativa Os07g0543000 AK068361.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 4e-19 At5g54680 ILR3 (iaa-leucine resistant3) C.G. S.X.
0.10 2e-4 48 Triticum aestivum Ta.26572.1.A1_at CD491239 - - 9e-20 At5g54680 ILR3 (iaa-leucine resistant3) C.G. S.X.
0.30 1e-55 216 Vitis vinifera 1612503_at CF512838 hypothetical protein LOC100245935 /// hypothetical protein LOC100256267 - 1e-13 At5g54680 ILR3 (iaa-leucine resistant3) C.G. S.X.
0.08 7e-2 38 Zea mays Zm.3786.1.S1_at BG841716 hypothetical protein LOC100273838 - 3e-3 At5g54680 ILR3 (iaa-leucine resistant3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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