CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.5965.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 Ptp.5965.1.S1_s_at CX169141 hypothetical protein - 2e-4 At3g60120 BGLU27 (BETA GLUCOSIDASE 27) S.X. H.G.
0.83 97.0 Ptp.5965.1.S1_at CX169141 hypothetical protein - 2e-4 At3g60120 BGLU27 (BETA GLUCOSIDASE 27) S.X. H.G.
0.71 92.6 PtpAffx.139109.1.S1_s_at CX168297 hypothetical protein - 5e-3 At3g03640 BGLU25 (BETA GLUCOSIDASE 25) S.X. H.G.
0.67 91.1 PtpAffx.34388.1.A1_at BP932598 hypothetical protein - 1e+0 At5g42965 nucleic acid binding / ribonuclease H S.X. H.G.
0.43 69.7 PtpAffx.105086.1.S1_s_at CA929621 hypothetical protein - 6e+0 At5g27370 unknown protein S.X. H.G.
0.29 50.5 Ptp.4063.1.S1_at CV253300 - - 1e+0 At3g03920 Gar1 RNA-binding region family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
36.3 100.0 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
11.3 99.2 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
9.8 98.9 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.1 96.8 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.1 96.8 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.2 95.6 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3 89.8 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 2169 Ptp.5965.1.S1_at CX169141 hypothetical protein - 2e-4 At3g60120 BGLU27 (BETA GLUCOSIDASE 27) C.G. S.X.
0.32 9e-158 557 PtpAffx.225133.1.S1_at pmrna44255 hypothetical protein - 2e-2 At2g44470 BGLU29 (BETA GLUCOSIDASE 29) C.G. S.X.
0.67 2e-155 549 PtpAffx.139109.1.S1_s_at CX168297 hypothetical protein - 5e-3 At3g03640 BGLU25 (BETA GLUCOSIDASE 25) C.G. S.X.
0.03 9e-10 65 PtpAffx.29632.1.S1_at CX654220 - - 2e-3 At3g18080 BGLU44 (B-S GLUCOSIDASE 44) C.G. S.X.
0.10 5e-8 59 PtpAffx.203906.1.S1_at pmrna7716 hypothetical protein - 1e-5 At2g44450 BGLU15 (BETA GLUCOSIDASE 15) C.G. S.X.
0.09 3e-6 54 PtpAffx.216622.1.S1_at pmrna31532 hypothetical protein - 6e-10 At3g60130 BGLU16 (BETA GLUCOSIDASE 16) C.G. S.X.
0.07 8e-4 46 PtpAffx.200540.1.S1_s_at pmrna1075 hypothetical protein - 2e-6 At5g54570 BGLU41 (BETA GLUCOSIDASE 41) C.G. S.X.
0.07 8e-4 46 PtpAffx.200539.1.S1_at pmrna1074 hypothetical protein - 1e-5 At3g09260 PYK10 C.G. S.X.
0.05 3e-3 44 PtpAffx.200185.1.S1_s_at pmrna342 hypothetical protein - 8e-4 At2g44450 BGLU15 (BETA GLUCOSIDASE 15) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-4 48 Arabidopsis thaliana At3g60120 825182 BGLU27 (BETA GLUCOSIDASE 27) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFA - - - C.G. S.X.
0.09 5e-2 40 Glycine max GmaAffx.92510.1.S1_at CF808235 - - 3e-7 At1g51490 BGLU36 (BETA GLUCOSIDASE 36) C.G. S.X.
0.04 3e-4 46 Hordeum vulgare Contig2347_at Contig2347 - - 3e-4 At3g18070 BGLU43 (BETA GLUCOSIDASE 43) C.G. S.X.
0.06 1e-3 46 Oryza sativa Os04g0474800 AK100820.1 - Glycoside hydrolase, family 1 protein 3e-3 At5g42260 BGLU12 (BETA GLUCOSIDASE 12) C.G. S.X.
0.02 6e-1 36 Triticum aestivum TaAffx.38244.1.S1_at BJ243672 - - 8e-4 At3g56040 UGP3 (UDP-GLUCOSE PYROPHOSPHORYLASE 3) C.G. S.X.
0.06 2e-1 36 Vitis vinifera 1620679_at CB972076 hypothetical protein LOC100255914 - 2e-16 At3g18070 BGLU43 (BETA GLUCOSIDASE 43) C.G. S.X.
0.02 2e+1 30 Zea mays ZmAffx.506.1.A1_at AI691930 - - 3e-1 At5g07225 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage