Gene omics information

Query gene ID	Ptp.5932.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	94.1	Ptp.5932.1.S1_s_at	CA928506	hypothetical protein	-	2e-19	At3g08510	ATPLC2 (PHOSPHOLIPASE C 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.212970.1.S1_s_at	pmrna25375	NPR1/NIM1-like regulatory protein /// hypothetical protein /// hypothetical protein	-	2e-5	At4g19660	NPR4 (NPR1-like protein 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.134048.1.S1_at	CX656559	-	-	3e-1	At1g04760	ATVAMP726	S.X.	H.G.	Please selecteFP Browser (expression)
0.48	75.4	Ptp.4739.1.S1_s_at	CV268981	hypothetical protein	-	8e-40	At3g10920	MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.212393.1.S1_s_at	pmrna24283	hypothetical protein	-	3e-49	At1g34320	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	Ptp.1361.3.S1_s_at	BU875386	hypothetical protein	-	2e-1	At4g14660	NRPE7	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	Ptp.7537.1.S1_at	CV236898	hypothetical protein	-	6e-57	At5g65430	GRF8 (GENERAL REGULATORY FACTOR 8)	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.10545.2.S1_a_at	BU875296	hypothetical protein	-	2e-10	At5g38630	ACYB-1	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.6	96.2	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.66	0	1415	PtpAffx.207753.1.S1_at	pmrna15429	hypothetical protein	-	6e-33	At3g08510	ATPLC2 (PHOSPHOLIPASE C 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.62	0	1306	PtpAffx.918.1.S1_at	CV262846	hypothetical protein	-	9e-28	At3g08510	ATPLC2 (PHOSPHOLIPASE C 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.23	9e-90	331	PtpAffx.151417.1.S1_at	DN496704	hypothetical protein	-	2e-12	At3g08510	ATPLC2 (PHOSPHOLIPASE C 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.26	6e-20	99	PtpAffx.52248.1.A1_at	CK091881	hypothetical protein	-	3e-11	At5g58690	phosphoinositide-specific phospholipase C family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.15	6e-20	99	PtpAffx.207752.1.S1_s_at	pmrna15428	hypothetical protein	-	1e-18	At2g40116	phosphoinositide-specific phospholipase C family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.15	6e-20	99	PtpAffx.207752.1.S1_at	pmrna15428	hypothetical protein	-	1e-18	At2g40116	phosphoinositide-specific phospholipase C family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	2e-19	97	PtpAffx.209280.1.S1_x_at	pmrna18336	hypothetical protein	-	2e-17	At2g40116	phosphoinositide-specific phospholipase C family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	2e-19	97	PtpAffx.209280.1.S1_at	pmrna18336	hypothetical protein	-	2e-17	At2g40116	phosphoinositide-specific phospholipase C family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.18	2e-19	97	PtpAffx.204906.1.S1_at	pmrna9697	hypothetical protein	-	2e-17	At5g58670	PLC1 (PHOSPHOLIPASE C 1)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	2e-19	97	Arabidopsis thaliana	At3g08510	819999	ATPLC2 (PHOSPHOLIPASE C 2)	Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.41	9e-59	228	Glycine max	GmaAffx.91549.1.S1_at	CF807274	phosphatidylinositol-specific phospholipase C /// phosphoinositide-specific phospholipase C P13	-	5e-15	At3g08510	ATPLC2 (PHOSPHOLIPASE C 2)	C.G.	S.X.	Please select
0.02	1e+0	34	Hordeum vulgare	EBro08_SQ004_B22_at	EBro08_SQ004_B22	-	-	3e+0	At3g14640	CYP72A10	C.G.	S.X.	Please select
0.14	2e-8	61	Oryza sativa	Os12g0562400	AJ276277.2	-	Phospholipase C (Fragment)	1e-11	At2g40116	phosphoinositide-specific phospholipase C family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-1	38	Triticum aestivum	TaAffx.117121.1.S1_at	CA692520	-	-	6e-2	At4g38530	ATPLC1 (ARABIDOPSIS THALIANA PHOSPHOLIPASE C 1)	C.G.	S.X.	Please select
0.34	3e-98	357	Vitis vinifera	1607756_s_at	CF519234	hypothetical protein LOC100241574	-	3e-40	At3g08510	ATPLC2 (PHOSPHOLIPASE C 2)	C.G.	S.X.	Please select
0.07	6e-5	48	Zea mays	Zm.4416.1.S1_at	AY536525.1	phospholipase C	-	5e-3	At5g58700	phosphoinositide-specific phospholipase C family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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