CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.5864.3.A1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 97.0 Ptp.5864.3.A1_at DN494422 - - 2e-6 At4g39260 GR-RBP8 S.X. H.G.
0.27 47.1 PtpAffx.225033.1.S1_at pmrna44066 hypothetical protein - 4e-1 At3g47570 leucine-rich repeat transmembrane protein kinase, putative S.X. H.G.
0.13 21.6 Ptp.5215.1.S1_at CV283860 hypothetical protein - 1e-8 At1g70700 TIFY7 S.X. H.G.
0.12 19.6 PtpAffx.216442.1.S1_s_at pmrna31219 hypothetical protein - 2e-111 Atcg00490 - S.X. H.G.
0.04 6.9 Ptp.5163.2.S1_s_at CV281456 - - 5e-25 At1g49970 CLPR1 S.X. H.G.
0.02 3.6 PtpAffx.68679.2.S1_a_at CV231234 hypothetical protein - 1e+0 At1g56660 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.0 99.2 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
8.9 98.7 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
8.1 98.5 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.0 97.5 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.8 97.4 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.3 96.9 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.1 96.8 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.1 96.8 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.0 96.6 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.0 95.3 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.72 0 956 Ptp.5864.1.S1_at CK087732 - - 1e-10 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) C.G. S.X.
0.43 6e-161 567 PtpAffx.249.43.S1_s_at CX167700 hypothetical protein - 4e-8 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) C.G. S.X.
0.40 2e-114 412 Ptp.1385.1.S1_s_at DN493245 hypothetical protein - 2e-1 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) C.G. S.X.
0.24 7e-59 228 PtpAffx.249.633.A1_x_at CV259819 - - 1e-9 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) C.G. S.X.
0.17 1e-35 151 Ptp.6970.3.S1_at CX175702 hypothetical protein - 4e-1 At4g38680 GRP2 (GLYCINE RICH PROTEIN 2) C.G. S.X.
0.03 2e-3 44 Ptp.3301.1.S1_at DN485494 - - 2e-3 At4g09800 RPS18C (S18 RIBOSOMAL PROTEIN) C.G. S.X.
0.03 3e-2 40 Ptp.7465.1.S1_at DN486030 - - 1e+0 At4g10280 - C.G. S.X.
0.02 3e-2 40 Ptp.3406.1.S1_at DN485404 - - 6e-1 At5g15800 SEP1 (SEPALLATA1) C.G. S.X.
0.03 3e-2 40 Ptp.3198.1.S1_at CK110034 - - 3e-1 At4g37550 formamidase, putative / formamide amidohydrolase, putative C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 2e-6 54 Arabidopsis thaliana At4g39260 830082 GR-RBP8 Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). - - - C.G. S.X.
0.24 2e-9 63 Glycine max Gma.5650.2.S1_a_at BG238507 - - 4e-6 At4g39260 GR-RBP8 C.G. S.X.
0.04 2e-1 36 Hordeum vulgare HV_CEa0014K16r2_at HV_CEa0014K16r2 - - 3e+0 At5g58780 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative C.G. S.X.
0.04 1e-2 42 Oryza sativa Os04g0653700 AK062771.1 - Hypothetical protein 5e+0 At4g13850 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) C.G. S.X.
0.05 4e-1 36 Triticum aestivum TaAffx.57536.1.S1_at CA627341 - - 2e-1 At2g36100 integral membrane family protein C.G. S.X.
0.21 3e-8 57 Vitis vinifera 1621554_s_at CF511998 similar to Os03g0670700 - 4e-6 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) C.G. S.X.
0.03 2e-1 36 Zea mays Zm.7408.1.A1_at CD447246 - - 9e-2 At4g05220 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage